Variant report

Variant	rs4856736
Chromosome Location	chr3:161658511-161658512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11927460	0.86[ASN][1000 genomes]
rs57468658	0.86[ASN][1000 genomes]
rs62278734	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161657000-161659200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:161657200-161658600	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:161657200-161658600	Enhancers	Dnd41	blood
4	chr3:161657200-161659200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:161657400-161658600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:161657400-161658600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:161657600-161658600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:161657600-161658600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:161657600-161658600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:161657600-161658800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:161657600-161658800	Enhancers	Adipose Nuclei	Adipose
12	chr3:161657800-161658600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:161657800-161658600	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr3:161657800-161659000	Enhancers	Fetal Stomach	stomach
15	chr3:161658000-161659000	Enhancers	Brain Anterior Caudate	brain
16	chr3:161658000-161659000	Enhancers	Brain Hippocampus Middle	brain
17	chr3:161658000-161659000	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:161658200-161658600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:161658200-161658800	Enhancers	Ovary	ovary
20	chr3:161658200-161659000	Enhancers	Fetal Lung	lung
21	chr3:161658200-161659800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:161658400-161658600	Flanking Active TSS	Brain Substantia Nigra	brain

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