Variant report

Variant	rs62278734
Chromosome Location	chr3:161659084-161659085
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11927460	0.84[ASN][1000 genomes]
rs4856736	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57468658	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161657000-161659200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:161657200-161659200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:161658200-161659800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:161658600-161659400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:161658600-161659600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:161658600-161659600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:161658600-161659600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:161659000-161659400	Weak transcription	Fetal Lung	lung
9	chr3:161659000-161659600	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links