Variant report

Variant	rs11927460
Chromosome Location	chr3:161662483-161662484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16834133	0.82[EUR][1000 genomes]
rs4856664	0.82[EUR][1000 genomes]
rs4856736	0.86[ASN][1000 genomes]
rs57468658	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57628918	0.86[EUR][1000 genomes]
rs59539229	0.82[EUR][1000 genomes]
rs62278734	0.84[ASN][1000 genomes]
rs6779506	0.82[EUR][1000 genomes]
rs73030447	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73030455	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73030460	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73030496	0.82[EUR][1000 genomes]
rs73032205	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161659200-161664000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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