Variant report
| Variant | rs73030460 |
|---|---|
| Chromosome Location | chr3:161696620-161696621 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11927460 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs16834133 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16847297 | 0.95[EUR][1000 genomes] |
| rs1858240 | 0.95[EUR][1000 genomes] |
| rs41497744 | 0.80[EUR][1000 genomes] |
| rs4333097 | 0.97[EUR][1000 genomes] |
| rs4856664 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4856745 | 0.90[EUR][1000 genomes] |
| rs56340997 | 0.80[EUR][1000 genomes] |
| rs57468658 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs57628918 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs58618482 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs59539229 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59872885 | 0.88[EUR][1000 genomes] |
| rs60022403 | 0.95[EUR][1000 genomes] |
| rs60886133 | 0.95[EUR][1000 genomes] |
| rs6779506 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73014613 | 0.95[EUR][1000 genomes] |
| rs73014673 | 0.95[EUR][1000 genomes] |
| rs73018723 | 0.80[EUR][1000 genomes] |
| rs73018726 | 0.80[EUR][1000 genomes] |
| rs73030447 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73030455 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73030496 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73032205 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7625559 | 0.95[EUR][1000 genomes] |
| rs7628078 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161693200-161696800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
