Variant report

Variant	rs6779506
Chromosome Location	chr3:161740419-161740420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161739398..161741171-chr3:161742842..161744517,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1154807	0.93[ASN][1000 genomes]
rs11927460	0.82[EUR][1000 genomes]
rs1397246	0.93[ASN][1000 genomes]
rs1510344	0.93[ASN][1000 genomes]
rs16834133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16847297	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858240	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983208	0.93[ASN][1000 genomes]
rs2089738	1.00[ASN][1000 genomes]
rs41497744	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4333097	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856664	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4856667	0.93[ASN][1000 genomes]
rs4856745	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4856747	0.82[ASN][1000 genomes]
rs56340997	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57468658	0.82[EUR][1000 genomes]
rs57628918	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58618482	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59539229	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59872885	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60022403	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60886133	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014613	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014673	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018723	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73018726	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73030447	0.87[EUR][1000 genomes]
rs73030455	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030460	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73030496	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73032205	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7620145	0.93[ASN][1000 genomes]
rs7625559	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628078	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647638	1.00[ASN][1000 genomes]
rs962873	0.93[ASN][1000 genomes]
rs9826218	0.93[ASN][1000 genomes]
rs9884026	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161738000-161741400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:161738400-161740800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:161739800-161740800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:161740200-161741000	Enhancers	Brain Hippocampus Middle	brain
5	chr3:161740400-161741000	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:161740400-161741200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:161740400-161741200	Enhancers	Brain Anterior Caudate	brain
8	chr3:161740400-161741200	Enhancers	Brain Substantia Nigra	brain

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