Variant report
| Variant | rs4856747 |
|---|---|
| Chromosome Location | chr3:161770234-161770235 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1033057 | 0.90[ASN][1000 genomes] |
| rs12107164 | 0.93[ASN][1000 genomes] |
| rs16847297 | 0.82[ASN][1000 genomes] |
| rs1858240 | 0.82[ASN][1000 genomes] |
| rs2089738 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs41497744 | 1.00[ASN][1000 genomes] |
| rs4333097 | 0.82[ASN][1000 genomes] |
| rs4856667 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4856745 | 1.00[ASN][1000 genomes] |
| rs56340997 | 1.00[ASN][1000 genomes] |
| rs60022403 | 0.82[ASN][1000 genomes] |
| rs60886133 | 0.82[ASN][1000 genomes] |
| rs6779506 | 0.82[ASN][1000 genomes] |
| rs6809637 | 0.96[ASN][1000 genomes] |
| rs73014613 | 0.82[ASN][1000 genomes] |
| rs73014673 | 0.82[ASN][1000 genomes] |
| rs73018723 | 1.00[ASN][1000 genomes] |
| rs73018726 | 1.00[ASN][1000 genomes] |
| rs73024748 | 0.96[ASN][1000 genomes] |
| rs7625559 | 0.82[ASN][1000 genomes] |
| rs7628078 | 0.82[ASN][1000 genomes] |
| rs7639999 | 0.96[ASN][1000 genomes] |
| rs7647638 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9850826 | 0.90[ASN][1000 genomes] |
| rs993595 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv460918 | chr3:161754109-161791399 | Enhancers Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv592143 | chr3:161754109-161791399 | Enhancers Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161766600-161771000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
