Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1033057	0.87[ASN][1000 genomes]
rs12107164	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16847297	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1858240	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs41497744	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4856745	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4856747	0.96[ASN][1000 genomes]
rs56340997	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60022403	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs60886133	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6809637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014613	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73014673	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73018723	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73018726	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7625559	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7628078	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7639999	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850826	0.87[ASN][1000 genomes]
rs993595	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877713	chr3:161807012-161847016	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv877714	chr3:161807012-161854219	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv877715	chr3:161807012-161862628	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv877716	chr3:161817368-161847016	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv2753414	chr3:161826690-161935978	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv877717	chr3:161827760-161864213	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
9	nsv519130	chr3:161829158-161832223	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
10	nsv877718	chr3:161829492-161878713	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161827600-161831400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:161829400-161829800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:161829400-161834200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:161829600-161829800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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