Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1033057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1154807	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12107164	0.84[ASN][1000 genomes]
rs1397246	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1510344	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1983208	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41497744	0.90[ASN][1000 genomes]
rs4856745	0.90[ASN][1000 genomes]
rs4856747	0.90[ASN][1000 genomes]
rs56340997	0.90[ASN][1000 genomes]
rs6809637	0.87[ASN][1000 genomes]
rs73018723	0.90[ASN][1000 genomes]
rs73018726	0.90[ASN][1000 genomes]
rs73024748	0.87[ASN][1000 genomes]
rs7620145	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7639999	0.87[ASN][1000 genomes]
rs962873	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9826218	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9884026	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs993595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161789400-161793400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:161790200-161793000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:161790600-161793400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:161791200-161792600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:161792000-161793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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