Variant report

Variant	rs73018723
Chromosome Location	chr3:161791443-161791444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1033057	0.90[ASN][1000 genomes]
rs12107164	0.93[ASN][1000 genomes]
rs16834133	0.80[EUR][1000 genomes]
rs16847297	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1858240	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2089738	0.82[ASN][1000 genomes]
rs41497744	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333097	0.82[ASN][1000 genomes]
rs4856664	0.80[EUR][1000 genomes]
rs4856745	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856747	1.00[ASN][1000 genomes]
rs56340997	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59539229	0.80[EUR][1000 genomes]
rs60022403	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60886133	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6779506	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6809637	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73014613	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73014673	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73018726	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024748	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73030455	0.80[EUR][1000 genomes]
rs73030460	0.80[EUR][1000 genomes]
rs73030496	0.80[EUR][1000 genomes]
rs73032205	0.80[EUR][1000 genomes]
rs7625559	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7628078	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7639999	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7647638	0.82[ASN][1000 genomes]
rs9850826	0.90[ASN][1000 genomes]
rs993595	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161789400-161793400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:161790200-161793000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:161790600-161793400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:161790800-161792000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:161791200-161792600	Enhancers	Cortex derived primary cultured neurospheres	brain

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