Variant report

Variant	rs1858240
Chromosome Location	chr3:161750476-161750477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1154807	0.93[ASN][1000 genomes]
rs1397246	0.93[ASN][1000 genomes]
rs1510344	0.93[ASN][1000 genomes]
rs16834133	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16847297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983208	0.93[ASN][1000 genomes]
rs2089738	1.00[ASN][1000 genomes]
rs41497744	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4333097	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856664	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4856667	0.93[ASN][1000 genomes]
rs4856745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4856747	0.82[ASN][1000 genomes]
rs56340997	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57628918	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58618482	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59539229	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59872885	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60022403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60886133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779506	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809637	0.81[AFR][1000 genomes]
rs73014613	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018723	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73018726	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73024748	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73030447	0.83[EUR][1000 genomes]
rs73030455	0.95[EUR][1000 genomes]
rs73030460	0.95[EUR][1000 genomes]
rs73030496	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73032205	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7620145	0.93[ASN][1000 genomes]
rs7625559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639999	0.80[EUR][1000 genomes]
rs7647638	1.00[ASN][1000 genomes]
rs962873	0.93[ASN][1000 genomes]
rs9826218	0.93[ASN][1000 genomes]
rs9884026	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161750200-161759000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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