Variant report

Variant	rs59872885
Chromosome Location	chr3:161725560-161725561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1154807	0.90[ASN][1000 genomes]
rs1397246	0.90[ASN][1000 genomes]
rs1510344	0.90[ASN][1000 genomes]
rs16834133	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847297	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1858240	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983208	0.90[ASN][1000 genomes]
rs2089738	0.96[ASN][1000 genomes]
rs4333097	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4856664	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4856667	0.96[ASN][1000 genomes]
rs57628918	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58618482	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59539229	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60022403	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60886133	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6779506	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73014613	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73014673	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73030455	0.88[EUR][1000 genomes]
rs73030460	0.88[EUR][1000 genomes]
rs73030496	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73032205	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620145	0.90[ASN][1000 genomes]
rs7625559	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7628078	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7647638	0.96[ASN][1000 genomes]
rs962873	0.90[ASN][1000 genomes]
rs9826218	0.90[ASN][1000 genomes]
rs9884026	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161724800-161726400	Enhancers	Muscle Satellite Cultured Cells	--

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