Variant report

Variant	rs4858619
Chromosome Location	chr3:24495904-24495905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13066150	1.00[EUR][1000 genomes]
rs28396317	1.00[EUR][1000 genomes]
rs28627946	1.00[EUR][1000 genomes]
rs4330216	1.00[EUR][1000 genomes]
rs4569583	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4858615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58432503	1.00[EUR][1000 genomes]
rs6791065	0.85[ASN][1000 genomes]
rs73150381	1.00[EUR][1000 genomes]
rs73152108	1.00[EUR][1000 genomes]
rs73152115	1.00[EUR][1000 genomes]
rs73152133	1.00[EUR][1000 genomes]
rs9819977	1.00[EUR][1000 genomes]
rs9822004	1.00[EUR][1000 genomes]
rs9882862	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24488800-24497800	Enhancers	Fetal Intestine Small	intestine
2	chr3:24489200-24497400	Enhancers	Fetal Intestine Large	intestine
3	chr3:24491000-24499400	Weak transcription	Aorta	Aorta
4	chr3:24491200-24502200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:24491400-24496600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:24492400-24498600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:24492400-24502200	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:24493200-24501800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:24493600-24498600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:24493600-24498600	Weak transcription	Adipose Nuclei	Adipose
11	chr3:24493600-24502000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:24493600-24504200	Weak transcription	Left Ventricle	heart
13	chr3:24494000-24496600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:24494000-24498800	Weak transcription	Psoas Muscle	Psoas
15	chr3:24494200-24498600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:24494200-24499200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:24495000-24497200	Weak transcription	Liver	Liver
18	chr3:24495200-24496000	Enhancers	Small Intestine	intestine
19	chr3:24495400-24496400	Weak transcription	HepG2	liver
20	chr3:24495400-24504800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:24495800-24496200	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:24495800-24496200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr3:24495800-24496400	Enhancers	Hela-S3	cervix
24	chr3:24495800-24496600	Active TSS	Rectal Mucosa Donor 29	rectum

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