Variant report

Variant	rs73152115
Chromosome Location	chr3:24532334-24532335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24400228..24405741-chr3:24531182..24533191,4	MCF-7	breast:
2	chr3:24516329..24518836-chr3:24531927..24534617,2	MCF-7	breast:
3	chr3:24310060..24312090-chr3:24531891..24534333,2	MCF-7	breast:
4	chr3:24506686..24508341-chr3:24532233..24535009,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13066150	1.00[EUR][1000 genomes]
rs28396317	1.00[EUR][1000 genomes]
rs28627946	1.00[EUR][1000 genomes]
rs4330216	1.00[EUR][1000 genomes]
rs4569583	1.00[EUR][1000 genomes]
rs4858615	1.00[EUR][1000 genomes]
rs4858618	1.00[EUR][1000 genomes]
rs4858619	1.00[EUR][1000 genomes]
rs58432503	1.00[EUR][1000 genomes]
rs73150381	1.00[EUR][1000 genomes]
rs73152108	1.00[EUR][1000 genomes]
rs73152133	1.00[EUR][1000 genomes]
rs9819977	1.00[EUR][1000 genomes]
rs9822004	1.00[EUR][1000 genomes]
rs9882862	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24515600-24533200	Weak transcription	Stomach Mucosa	stomach
2	chr3:24519400-24532800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:24523000-24534000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:24525600-24533800	Weak transcription	Brain Angular Gyrus	brain
5	chr3:24526800-24534000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:24527600-24535400	Weak transcription	Lung	lung
7	chr3:24527800-24533600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:24529000-24532400	Enhancers	Psoas Muscle	Psoas
9	chr3:24529400-24535000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:24529800-24533000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:24529800-24534000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:24529800-24534400	Weak transcription	NHDF-Ad	bronchial
13	chr3:24529800-24535200	Weak transcription	NHEK	skin
14	chr3:24530400-24533000	Enhancers	Fetal Intestine Small	intestine
15	chr3:24530400-24534600	Enhancers	Adipose Nuclei	Adipose
16	chr3:24530800-24532600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:24530800-24533200	Enhancers	Fetal Intestine Large	intestine
18	chr3:24530800-24533600	Enhancers	HepG2	liver
19	chr3:24530800-24534400	Enhancers	Colon Smooth Muscle	Colon
20	chr3:24530800-24534800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:24531000-24532600	Enhancers	Fetal Lung	lung
22	chr3:24531000-24533200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:24531200-24533000	Weak transcription	Right Ventricle	heart
24	chr3:24531200-24533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:24531800-24532400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:24531800-24532400	Flanking Active TSS	Liver	Liver
27	chr3:24531800-24532400	Enhancers	Esophagus	oesophagus
28	chr3:24531800-24532400	Enhancers	Gastric	stomach
29	chr3:24531800-24532400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr3:24531800-24533400	Enhancers	Aorta	Aorta
31	chr3:24532000-24532800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:24532000-24533000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:24532000-24534000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:24532000-24534000	Weak transcription	HMEC	breast
35	chr3:24532000-24534800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:24532200-24533000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:24532200-24533000	Weak transcription	Left Ventricle	heart
38	chr3:24532200-24534000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:24532200-24534600	Enhancers	K562	blood
40	chr3:24532200-24535000	Weak transcription	Hela-S3	cervix
41	chr3:24532200-24535200	Weak transcription	Right Atrium	heart
42	chr3:24532200-24535400	Weak transcription	Pancreas	Pancrea

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