Variant report

Variant	rs73152133
Chromosome Location	chr3:24552575-24552576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13066150	1.00[EUR][1000 genomes]
rs28396317	1.00[EUR][1000 genomes]
rs28627946	1.00[EUR][1000 genomes]
rs4330216	1.00[EUR][1000 genomes]
rs4569583	1.00[EUR][1000 genomes]
rs4858615	1.00[EUR][1000 genomes]
rs4858618	1.00[EUR][1000 genomes]
rs4858619	1.00[EUR][1000 genomes]
rs58432503	1.00[EUR][1000 genomes]
rs73150381	1.00[EUR][1000 genomes]
rs73152108	1.00[EUR][1000 genomes]
rs73152115	1.00[EUR][1000 genomes]
rs9819977	1.00[EUR][1000 genomes]
rs9822004	1.00[EUR][1000 genomes]
rs9882862	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24538200-24560600	Weak transcription	Aorta	Aorta
2	chr3:24539000-24560200	Weak transcription	HepG2	liver
3	chr3:24550000-24555200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:24550200-24554200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:24550400-24554200	Weak transcription	NHLF	lung
6	chr3:24550600-24554400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:24550600-24560800	Weak transcription	NHDF-Ad	bronchial
8	chr3:24550800-24554400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:24551000-24554200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:24551400-24555400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:24552200-24555400	Weak transcription	Fetal Intestine Large	intestine
12	chr3:24552200-24555600	Weak transcription	Hela-S3	cervix
13	chr3:24552200-24558000	Weak transcription	K562	blood
14	chr3:24552200-24560600	Weak transcription	Fetal Intestine Small	intestine
15	chr3:24552400-24555400	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links