The 2.0 version of rSNPBase

Variant report

Variant rs4858896
Chromosome Location chr3:47496854-47496855
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:47476600-47514200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr3:47481400-47500600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:47484000-47507800 Weak transcription Primary B cells from cord blood blood
4 chr3:47484000-47511200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr3:47484200-47511200 Weak transcription Primary B cells from peripheral blood blood
6 chr3:47484400-47497200 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr3:47484600-47497400 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr3:47484600-47500600 Weak transcription Primary hematopoietic stem cells blood
9 chr3:47484600-47514000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr3:47484600-47514200 Weak transcription Primary T cells fromperipheralblood blood
11 chr3:47484600-47514200 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr3:47484600-47514200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr3:47484600-47514800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr3:47484800-47504400 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr3:47484800-47504600 Weak transcription Primary T cells from cord blood blood
16 chr3:47484800-47514800 Weak transcription Thymus Thymus
17 chr3:47485000-47514800 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr3:47485200-47502600 Weak transcription K562 blood
19 chr3:47485400-47503200 Weak transcription Gastric stomach
20 chr3:47486000-47497200 Weak transcription A549 lung
21 chr3:47486000-47497400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr3:47486000-47500200 Weak transcription Fetal Intestine Large intestine
23 chr3:47486000-47500400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr3:47486000-47504600 Weak transcription Rectal Smooth Muscle rectum
25 chr3:47486000-47516000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr3:47486000-47516000 Weak transcription Small Intestine intestine
27 chr3:47486000-47516000 Weak transcription HSMM muscle
28 chr3:47486200-47497200 Weak transcription Hela-S3 cervix
29 chr3:47486200-47502600 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr3:47486200-47506000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr3:47486200-47516000 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr3:47486600-47500600 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr3:47487000-47502400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr3:47487400-47497600 Weak transcription Liver Liver
35 chr3:47489200-47500400 Weak transcription Fetal Intestine Small intestine
36 chr3:47493400-47510800 Weak transcription Spleen Spleen
37 chr3:47494000-47497200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr3:47494000-47503000 Weak transcription Right Ventricle heart
39 chr3:47494200-47500600 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr3:47494400-47497600 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr3:47494400-47497600 Weak transcription Stomach Mucosa stomach
42 chr3:47494400-47498600 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr3:47494400-47504200 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr3:47494400-47506400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr3:47494600-47497200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr3:47494600-47508200 Weak transcription Fetal Stomach stomach
47 chr3:47494600-47514000 Weak transcription Esophagus oesophagus
48 chr3:47494600-47514000 Weak transcription Pancreas Pancrea
49 chr3:47494800-47504400 Weak transcription Left Ventricle heart
50 chr3:47494800-47511200 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015