Variant report
Variant | rs12488371 |
---|---|
Chromosome Location | chr3:47259922-47259923 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-NBEAL2-2 | chr3:47259473-47260609 | refGeneNc_4033_NR_033373 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1024036 | 1.00[EUR][1000 genomes] |
rs1038393 | 1.00[EUR][1000 genomes] |
rs10461017 | 1.00[EUR][1000 genomes] |
rs10461019 | 1.00[EUR][1000 genomes] |
rs10865945 | 1.00[EUR][1000 genomes] |
rs10865947 | 1.00[EUR][1000 genomes] |
rs1091068 | 1.00[EUR][1000 genomes] |
rs11130109 | 1.00[EUR][1000 genomes] |
rs11706212 | 1.00[EUR][1000 genomes] |
rs11707272 | 1.00[EUR][1000 genomes] |
rs11708257 | 1.00[EUR][1000 genomes] |
rs11709693 | 1.00[EUR][1000 genomes] |
rs11709876 | 1.00[EUR][1000 genomes] |
rs11713537 | 1.00[EUR][1000 genomes] |
rs11922925 | 1.00[EUR][1000 genomes] |
rs11928558 | 1.00[EUR][1000 genomes] |
rs12330516 | 1.00[EUR][1000 genomes] |
rs12487763 | 1.00[EUR][1000 genomes] |
rs12631697 | 1.00[EUR][1000 genomes] |
rs13062185 | 1.00[EUR][1000 genomes] |
rs13077134 | 1.00[EUR][1000 genomes] |
rs13078181 | 1.00[EUR][1000 genomes] |
rs13079416 | 1.00[EUR][1000 genomes] |
rs13082531 | 1.00[EUR][1000 genomes] |
rs13323092 | 1.00[EUR][1000 genomes] |
rs1378818 | 1.00[EUR][1000 genomes] |
rs1463394 | 1.00[EUR][1000 genomes] |
rs1473382 | 1.00[EUR][1000 genomes] |
rs1531874 | 1.00[EUR][1000 genomes] |
rs1563431 | 1.00[EUR][1000 genomes] |
rs1814564 | 1.00[EUR][1000 genomes] |
rs1869870 | 1.00[EUR][1000 genomes] |
rs1872165 | 1.00[EUR][1000 genomes] |
rs1874264 | 1.00[EUR][1000 genomes] |
rs1979736 | 1.00[EUR][1000 genomes] |
rs2124509 | 1.00[EUR][1000 genomes] |
rs2350642 | 1.00[EUR][1000 genomes] |
rs2385868 | 1.00[EUR][1000 genomes] |
rs28735306 | 1.00[EUR][1000 genomes] |
rs295431 | 1.00[EUR][1000 genomes] |
rs295432 | 1.00[EUR][1000 genomes] |
rs295434 | 1.00[EUR][1000 genomes] |
rs295443 | 1.00[EUR][1000 genomes] |
rs295444 | 1.00[EUR][1000 genomes] |
rs295445 | 1.00[EUR][1000 genomes] |
rs295448 | 1.00[EUR][1000 genomes] |
rs295450 | 1.00[EUR][1000 genomes] |
rs295451 | 1.00[EUR][1000 genomes] |
rs295453 | 1.00[EUR][1000 genomes] |
rs295454 | 1.00[EUR][1000 genomes] |
rs295455 | 1.00[EUR][1000 genomes] |
rs295456 | 1.00[EUR][1000 genomes] |
rs295457 | 1.00[EUR][1000 genomes] |
rs295459 | 1.00[EUR][1000 genomes] |
rs4018904 | 1.00[EUR][1000 genomes] |
rs4282092 | 1.00[EUR][1000 genomes] |
rs4289375 | 1.00[EUR][1000 genomes] |
rs4324490 | 1.00[EUR][1000 genomes] |
rs4373094 | 1.00[EUR][1000 genomes] |
rs4378998 | 1.00[EUR][1000 genomes] |
rs4389512 | 1.00[EUR][1000 genomes] |
rs4450857 | 1.00[EUR][1000 genomes] |
rs4478107 | 1.00[EUR][1000 genomes] |
rs448018 | 1.00[EUR][1000 genomes] |
rs4522803 | 1.00[EUR][1000 genomes] |
rs4525902 | 1.00[EUR][1000 genomes] |
rs4543047 | 1.00[EUR][1000 genomes] |
rs4682828 | 1.00[EUR][1000 genomes] |
rs4682832 | 1.00[EUR][1000 genomes] |
rs4682833 | 1.00[EUR][1000 genomes] |
rs4682834 | 1.00[EUR][1000 genomes] |
rs4682835 | 1.00[EUR][1000 genomes] |
rs4682836 | 1.00[EUR][1000 genomes] |
rs4682838 | 1.00[EUR][1000 genomes] |
rs4683277 | 1.00[EUR][1000 genomes] |
rs4683279 | 1.00[EUR][1000 genomes] |
rs4683283 | 1.00[EUR][1000 genomes] |
rs4683284 | 1.00[EUR][1000 genomes] |
rs4683285 | 1.00[EUR][1000 genomes] |
rs4683286 | 1.00[EUR][1000 genomes] |
rs4858812 | 1.00[EUR][1000 genomes] |
rs4858823 | 1.00[EUR][1000 genomes] |
rs4858896 | 1.00[EUR][1000 genomes] |
rs6442042 | 1.00[EUR][1000 genomes] |
rs6442043 | 1.00[EUR][1000 genomes] |
rs6442044 | 1.00[EUR][1000 genomes] |
rs6442047 | 1.00[EUR][1000 genomes] |
rs6442048 | 1.00[EUR][1000 genomes] |
rs6442062 | 1.00[EUR][1000 genomes] |
rs6442063 | 1.00[EUR][1000 genomes] |
rs6442066 | 1.00[EUR][1000 genomes] |
rs6442068 | 1.00[EUR][1000 genomes] |
rs6442069 | 1.00[EUR][1000 genomes] |
rs648226 | 1.00[EUR][1000 genomes] |
rs6766676 | 1.00[EUR][1000 genomes] |
rs6767868 | 1.00[EUR][1000 genomes] |
rs6768169 | 1.00[EUR][1000 genomes] |
rs6772449 | 1.00[EUR][1000 genomes] |
rs6775797 | 1.00[EUR][1000 genomes] |
rs6778673 | 1.00[EUR][1000 genomes] |
rs6778687 | 1.00[EUR][1000 genomes] |
rs6780994 | 1.00[EUR][1000 genomes] |
rs6783591 | 1.00[EUR][1000 genomes] |
rs6785462 | 1.00[EUR][1000 genomes] |
rs6785538 | 1.00[EUR][1000 genomes] |
rs6787210 | 1.00[EUR][1000 genomes] |
rs6788978 | 1.00[EUR][1000 genomes] |
rs6789730 | 1.00[EUR][1000 genomes] |
rs6806521 | 1.00[EUR][1000 genomes] |
rs6808117 | 1.00[EUR][1000 genomes] |
rs6808629 | 1.00[EUR][1000 genomes] |
rs6809904 | 1.00[EUR][1000 genomes] |
rs7372780 | 1.00[EUR][1000 genomes] |
rs73831482 | 1.00[EUR][1000 genomes] |
rs7615774 | 1.00[EUR][1000 genomes] |
rs7624549 | 1.00[EUR][1000 genomes] |
rs7630154 | 1.00[EUR][1000 genomes] |
rs7630904 | 1.00[EUR][1000 genomes] |
rs7638549 | 1.00[EUR][1000 genomes] |
rs7639121 | 1.00[EUR][1000 genomes] |
rs7643150 | 1.00[EUR][1000 genomes] |
rs7643868 | 1.00[EUR][1000 genomes] |
rs7644043 | 1.00[EUR][1000 genomes] |
rs7644382 | 1.00[EUR][1000 genomes] |
rs7646076 | 1.00[EUR][1000 genomes] |
rs7649413 | 1.00[EUR][1000 genomes] |
rs7649941 | 1.00[EUR][1000 genomes] |
rs7652492 | 1.00[EUR][1000 genomes] |
rs807930 | 1.00[EUR][1000 genomes] |
rs807933 | 1.00[EUR][1000 genomes] |
rs900688 | 1.00[EUR][1000 genomes] |
rs900689 | 1.00[EUR][1000 genomes] |
rs900690 | 1.00[EUR][1000 genomes] |
rs900691 | 1.00[EUR][1000 genomes] |
rs900692 | 1.00[EUR][1000 genomes] |
rs900694 | 1.00[EUR][1000 genomes] |
rs924009 | 1.00[EUR][1000 genomes] |
rs936177 | 1.00[EUR][1000 genomes] |
rs936178 | 1.00[EUR][1000 genomes] |
rs936179 | 1.00[EUR][1000 genomes] |
rs936180 | 1.00[EUR][1000 genomes] |
rs936181 | 1.00[EUR][1000 genomes] |
rs936185 | 1.00[EUR][1000 genomes] |
rs936186 | 1.00[EUR][1000 genomes] |
rs9812407 | 1.00[EUR][1000 genomes] |
rs9819475 | 1.00[EUR][1000 genomes] |
rs9823480 | 1.00[EUR][1000 genomes] |
rs9826488 | 1.00[EUR][1000 genomes] |
rs9827293 | 1.00[EUR][1000 genomes] |
rs9828124 | 1.00[EUR][1000 genomes] |
rs9828473 | 1.00[EUR][1000 genomes] |
rs9852167 | 1.00[EUR][1000 genomes] |
rs9861247 | 1.00[EUR][1000 genomes] |
rs9861265 | 1.00[EUR][1000 genomes] |
rs9862711 | 1.00[EUR][1000 genomes] |
rs9869489 | 1.00[EUR][1000 genomes] |
rs9878813 | 1.00[EUR][1000 genomes] |
rs9883152 | 1.00[EUR][1000 genomes] |
rs9990284 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv876756 | chr3:47002931-47586514 | Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
2 | nsv1007714 | chr3:47084387-47331570 | Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
3 | nsv1014457 | chr3:47222292-47335175 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
4 | nsv536560 | chr3:47222292-47335175 | Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
5 | esv1799921 | chr3:47259253-47283105 | Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:47208200-47276600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
2 | chr3:47223800-47269200 | Weak transcription | Fetal Muscle Trunk | muscle |
3 | chr3:47245400-47266600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
4 | chr3:47247000-47269400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |