Variant report

Variant	rs13062185
Chromosome Location	chr3:47020835-47020836
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:47020789-47021415	SK-N-SH	brain:	n/a	n/a
2	CBX3	chr3:47020391-47021425	K562	blood:	n/a	n/a
3	HEY1	chr3:47020717-47021500	K562	blood:	n/a	chr3:47021192-47021207 chr3:47021233-47021248 chr3:47021139-47021154
4	POLR2A	chr3:47020814-47021642	NB4	blood:	n/a	n/a
5	POLR2A	chr3:47020495-47021573	K562	blood:	n/a	n/a
6	SP4	chr3:47020652-47021152	H1-hESC	embryonic stem cell:	n/a	chr3:47021056-47021067
7	MAZ	chr3:47020667-47021700	Hela-S3	cervix:	n/a	n/a
8	MXI1	chr3:47020475-47021913	IMR90	lung:	n/a	n/a
9	ZNF143	chr3:47020642-47021465	K562	blood:	n/a	n/a
10	ZBTB7A	chr3:47020652-47021283	ECC-1	luminal epithelium:	n/a	chr3:47020877-47020884
11	RCOR1	chr3:47020556-47021805	K562	blood:	n/a	n/a
12	EP300	chr3:47020626-47021433	SK-N-SH	brain:	n/a	chr3:47021290-47021299
13	RUNX3	chr3:47020651-47021458	GM12878	blood:	n/a	n/a
14	UBTF	chr3:47020623-47021834	K562	blood:	n/a	n/a
15	POLR2A	chr3:47020806-47021492	K562	blood:	n/a	n/a
16	RCOR1	chr3:47020401-47021544	IMR90	lung:	n/a	n/a
17	YY1	chr3:47020592-47021499	H1-hESC	embryonic stem cell:	n/a	chr3:47020665-47020676 chr3:47021013-47021024 chr3:47020871-47020880 chr3:47021143-47021152 chr3:47021109-47021123 chr3:47021107-47021118 chr3:47021293-47021302
18	YY1	chr3:47020682-47021449	ECC-1	luminal epithelium:	n/a	chr3:47021013-47021024 chr3:47020871-47020880 chr3:47021143-47021152 chr3:47021109-47021123 chr3:47021107-47021118 chr3:47021293-47021302
19	MTA3	chr3:47020405-47021221	GM12878	blood:	n/a	n/a
20	POLR2A	chr3:47020714-47021464	K562	blood:	n/a	n/a
21	SIN3AK20	chr3:47020787-47021618	PANC-1	pancreas:	n/a	n/a
22	YY1	chr3:47020729-47021390	SK-N-SH_RA	brain:	n/a	chr3:47021013-47021024 chr3:47020871-47020880 chr3:47021143-47021152 chr3:47021109-47021123 chr3:47021107-47021118 chr3:47021293-47021302
23	POLR2A	chr3:47020624-47021414	U87	brain:	n/a	n/a
24	MAX	chr3:47020395-47021897	A549	lung:	n/a	chr3:47020613-47020623 chr3:47020626-47020635
25	POLR2A	chr3:47020731-47021571	HL-60	blood:	n/a	n/a
26	CHD2	chr3:47020819-47021244	H1-hESC	embryonic stem cell:	n/a	n/a
27	HA-E2F1	chr3:47020589-47021847	MCF-7	breast:	n/a	chr3:47020871-47020880 chr3:47020710-47020722 chr3:47020890-47020901 chr3:47021293-47021302 chr3:47021236-47021245
28	MAX	chr3:47020656-47021375	K562	blood:	n/a	n/a
29	POLR2A	chr3:47020735-47021374	PFSK-1	brain:	n/a	n/a
30	POLR2A	chr3:47020748-47021561	HUVEC	blood vessel:	n/a	n/a
31	POLR2A	chr3:47020829-47021123	GM12891	blood:	n/a	n/a
32	POLR2A	chr3:47020688-47021680	GM12891	blood:	n/a	n/a
33	E2F6	chr3:47020481-47021673	K562	blood:	n/a	chr3:47020871-47020880 chr3:47020710-47020722 chr3:47020890-47020901 chr3:47021316-47021328 chr3:47021293-47021302 chr3:47021236-47021245
34	POLR2A	chr3:47020642-47021738	GM18505	blood:	n/a	n/a
35	TAF1	chr3:47020827-47021347	Hela-S3	cervix:	n/a	n/a
36	IRF1	chr3:47020796-47021366	K562	blood:	n/a	chr3:47021100-47021114
37	YY1	chr3:47020494-47021487	H1-hESC	embryonic stem cell:	n/a	chr3:47020665-47020676 chr3:47021013-47021024 chr3:47020871-47020880 chr3:47021143-47021152 chr3:47021109-47021123 chr3:47021107-47021118 chr3:47021293-47021302
38	HCFC1	chr3:47020564-47021913	Hela-S3	cervix:	n/a	n/a
39	MXI1	chr3:47020690-47021764	GM12878	blood:	n/a	n/a
40	ZC3H11A	chr3:47020727-47021180	K562	blood:	n/a	n/a
41	TEAD4	chr3:47020714-47021139	H1-hESC	embryonic stem cell:	n/a	n/a
42	MAX	chr3:47020752-47021804	MCF-7	breast:	n/a	n/a
43	TAF1	chr3:47020827-47021464	HepG2	liver:	n/a	n/a
44	E2F6	chr3:47020418-47021650	K562	blood:	n/a	chr3:47020871-47020880 chr3:47020710-47020722 chr3:47020890-47020901 chr3:47021316-47021328 chr3:47021293-47021302 chr3:47021236-47021245
45	CTBP2	chr3:47020488-47021916	H1-hESC	embryonic stem cell:	n/a	n/a
46	POLR2A	chr3:47020718-47021687	A549	lung:	n/a	n/a
47	E2F6	chr3:47020405-47021786	H1-hESC	embryonic stem cell:	n/a	chr3:47020871-47020880 chr3:47020710-47020722 chr3:47020890-47020901 chr3:47021316-47021328 chr3:47021293-47021302 chr3:47021236-47021245
48	YY1	chr3:47020624-47021527	GM12878	blood:	n/a	chr3:47020665-47020676 chr3:47021013-47021024 chr3:47020871-47020880 chr3:47021143-47021152 chr3:47021109-47021123 chr3:47021107-47021118 chr3:47021293-47021302
49	MAX	chr3:47020660-47021775	GM12878	blood:	n/a	n/a
50	CEBPD	chr3:47020796-47021451	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:47020805-47020855	Hepatocyte	liver:	n/a
2	chr3:47020805-47020855	HCF	heart:	n/a
3	chr3:47020805-47020855	AG09319	gingival:	n/a
4	chr3:47020805-47020855	U87	brain:	n/a
5	chr3:47020805-47020855	NH-A	brain:	n/a
6	chr3:47020805-47020855	T-47D	breast:	n/a
7	chr3:47020805-47020855	HRCEpiC	kidney:	n/a
8	chr3:47020805-47020855	GM19239	blood:	n/a
9	chr3:47020805-47020855	AG04449	skin:	fetal
10	chr3:47020805-47020855	AG09309	skin:	n/a
11	chr3:47020805-47020855	A549	lung:	n/a
12	chr3:47020805-47020855	MCF10A-Er-Src	breast:	n/a
13	chr3:47020805-47020855	HEK293	kidney:	embryo
14	chr3:47020805-47020855	NB4	blood:	n/a
15	chr3:47020805-47020855	AG04450	lung:	fetal
16	chr3:47020805-47020855	SKMC	muscle:	n/a
17	chr3:47020805-47020855	HCM	heart:	n/a
18	chr3:47020805-47020855	HAEpiC	amniotic membrane:	n/a
19	chr3:47020805-47020855	IMR90	lung:	fetal
20	chr3:47020805-47020855	NT2-D1	testis:	n/a
21	chr3:47020805-47020855	MCF-7	breast:	n/a
22	chr3:47020805-47020855	GM12892	blood:	n/a
23	chr3:47020805-47020855	Jurkat	blood:	n/a
24	chr3:47020805-47020855	GM12878	blood:	n/a
25	chr3:47020805-47020855	HUVEC	blood vessel:	n/a
26	chr3:47020805-47020855	AG10803	skin:	n/a
27	chr3:47020805-47020855	HNPCEpiC	eye:	n/a
28	chr3:47020805-47020855	Hela-S3	cervix:	n/a
29	chr3:47020805-47020855	SK-N-SH_RA	brain:	n/a
30	chr3:47020805-47020855	GM12891	blood:	n/a
31	chr3:47020805-47020855	ProgFib	skin:	n/a
32	chr3:47020805-47020855	BJ	skin:	n/a
33	chr3:47020805-47020855	H1-hESC	embryonic stem cell:	embryo
34	chr3:47020805-47020855	HEEpiC	esophagus:	n/a
35	chr3:47020805-47020855	RPTEC	kidney:	n/a
36	chr3:47020805-47020855	BE2_C	brain:	n/a
37	chr3:47020805-47020855	K562	blood:	n/a
38	chr3:47020805-47020855	HCT-116	colon:	n/a
39	chr3:47020805-47020855	HPAEpiC	pulmonary alveolar:	n/a
40	chr3:47020805-47020855	HMEC	breast:	n/a
41	chr3:47020805-47020855	Caco-2	colon:	n/a
42	chr3:47020805-47020855	HRE	kidney:	n/a
43	chr3:47020805-47020855	SK-N-SH	brain:	n/a
44	chr3:47020805-47020855	HCPEpiC	choroid plexus:	n/a
45	chr3:47020805-47020855	LNCaP	prostate:	n/a
46	chr3:47020805-47020855	ECC-1	luminal epithelium:	n/a
47	chr3:47020805-47020855	SK-N-MC	brain:	n/a
48	chr3:47020805-47020855	NHDF-neo	bronchial:	n/a
49	chr3:47020805-47020855	ovcar-3	ovarian:	n/a
50	chr3:47020805-47020855	AoSMC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:47020574..47023054-chr3:47051075..47053218,2	MCF-7	breast:
2	chr3:47019689..47022693-chr3:47040941..47043835,3	MCF-7	breast:
3	chr3:47019697..47022640-chr3:47324324..47326151,2	K562	blood:

Variant related genes	Relation type
CCDC12	TF binding region
NBEAL2	TF binding region
NBEAL2	CpG island
CCDC12	CpG island
ENSG00000236409	Chromatin interaction
ENSG00000114648	Chromatin interaction
ENSG00000088727	Chromatin interaction
ENSG00000160796	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10461017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10461019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10865945	1.00[EUR][1000 genomes]
rs11130108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11130109	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11706212	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11708257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11709693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11709876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11713537	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922925	1.00[EUR][1000 genomes]
rs11928558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12330516	1.00[EUR][1000 genomes]
rs12487763	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12488371	1.00[EUR][1000 genomes]
rs13062516	0.97[AFR][1000 genomes]
rs13078181	1.00[EUR][1000 genomes]
rs13079416	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13082531	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13323092	1.00[EUR][1000 genomes]
rs1378818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1463394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1466272	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1466273	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1466274	0.89[AMR][1000 genomes]
rs1473382	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1473384	1.00[EUR][1000 genomes]
rs1473385	1.00[EUR][1000 genomes]
rs1563431	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1563432	1.00[EUR][1000 genomes]
rs1814564	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869870	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874264	1.00[EUR][1000 genomes]
rs1979736	1.00[EUR][1000 genomes]
rs2124509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2124510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2350642	1.00[EUR][1000 genomes]
rs2385863	1.00[EUR][1000 genomes]
rs2385868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2385869	1.00[AMR][1000 genomes]
rs2385872	0.87[AFR][1000 genomes]
rs28735306	1.00[EUR][1000 genomes]
rs2891887	1.00[AMR][1000 genomes]
rs2891893	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34147581	1.00[EUR][1000 genomes]
rs35366910	1.00[EUR][1000 genomes]
rs4018904	1.00[EUR][1000 genomes]
rs4282092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289375	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4324490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4373094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4378998	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4389512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4450857	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478107	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4522803	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4525902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4543047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682828	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682832	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682833	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682834	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4682835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682836	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682838	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682840	0.89[AMR][1000 genomes]
rs4682841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682843	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682846	1.00[EUR][1000 genomes]
rs4682847	1.00[EUR][1000 genomes]
rs4683277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683279	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683285	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683288	1.00[EUR][1000 genomes]
rs4683289	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683292	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683303	1.00[EUR][1000 genomes]
rs6442041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6442042	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6442043	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6442044	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6442047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6442048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6442050	0.85[AFR][1000 genomes]
rs6442062	1.00[EUR][1000 genomes]
rs6442063	1.00[EUR][1000 genomes]
rs6766676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767868	1.00[EUR][1000 genomes]
rs6768169	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772449	1.00[EUR][1000 genomes]
rs6775797	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778687	1.00[EUR][1000 genomes]
rs6780994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785462	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787210	1.00[EUR][1000 genomes]
rs6804732	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808052	1.00[EUR][1000 genomes]
rs6808117	1.00[EUR][1000 genomes]
rs6808629	1.00[EUR][1000 genomes]
rs6809904	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831482	1.00[EUR][1000 genomes]
rs7615774	1.00[EUR][1000 genomes]
rs7621530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624549	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625011	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7630154	1.00[EUR][1000 genomes]
rs7630904	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631423	0.82[AFR][1000 genomes]
rs7638549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639121	1.00[EUR][1000 genomes]
rs7643150	1.00[EUR][1000 genomes]
rs7643868	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644382	1.00[EUR][1000 genomes]
rs7646076	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7649413	1.00[EUR][1000 genomes]
rs7649941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7650142	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652492	1.00[EUR][1000 genomes]
rs936173	1.00[EUR][1000 genomes]
rs936177	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs936178	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs936179	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs936180	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs936181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs936182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs936185	1.00[EUR][1000 genomes]
rs936186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9812407	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9819344	1.00[EUR][1000 genomes]
rs9819475	1.00[EUR][1000 genomes]
rs9823480	1.00[EUR][1000 genomes]
rs9826488	1.00[EUR][1000 genomes]
rs9827293	1.00[EUR][1000 genomes]
rs9828473	1.00[EUR][1000 genomes]
rs9833500	1.00[EUR][1000 genomes]
rs9836801	1.00[EUR][1000 genomes]
rs9850151	1.00[EUR][1000 genomes]
rs9852167	1.00[EUR][1000 genomes]
rs9861247	1.00[EUR][1000 genomes]
rs9861265	1.00[EUR][1000 genomes]
rs9862711	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869489	1.00[EUR][1000 genomes]
rs9878813	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9883152	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9883909	1.00[EUR][1000 genomes]
rs9990284	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1009396	chr3:46994991-47048166	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	esv1800172	chr3:47013346-47049306	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv590209	chr3:47018214-47050784	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
10	nsv876757	chr3:47018214-47058057	Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	21 gene(s)	inside rSNPs	diseases
11	esv3359860	chr3:47019973-47022521	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47018400-47021000	Flanking Active TSS	Dnd41	blood
2	chr3:47019400-47021000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr3:47019600-47021000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr3:47019800-47021000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr3:47020200-47021000	Flanking Active TSS	Primary B cells from peripheral blood	blood
6	chr3:47020200-47021600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr3:47020200-47021800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr3:47020400-47021000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:47020400-47021000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr3:47020400-47021000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr3:47020400-47021000	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr3:47020400-47021000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr3:47020400-47021000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr3:47020400-47021000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr3:47020400-47021000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:47020400-47021000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:47020400-47021000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:47020400-47021000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr3:47020400-47021000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:47020400-47021000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:47020400-47021000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr3:47020400-47021000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:47020400-47021000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:47020400-47021000	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr3:47020400-47021000	Flanking Active TSS	Liver	Liver
26	chr3:47020400-47021000	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr3:47020400-47021000	Flanking Active TSS	Colonic Mucosa	Colon
28	chr3:47020400-47021000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr3:47020400-47021000	Flanking Active TSS	Fetal Brain Female	brain
30	chr3:47020400-47021000	Flanking Active TSS	Fetal Intestine Small	intestine
31	chr3:47020400-47021000	Flanking Active TSS	Fetal Lung	lung
32	chr3:47020400-47021000	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr3:47020400-47021000	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr3:47020400-47021000	Flanking Active TSS	Fetal Stomach	stomach
35	chr3:47020400-47021000	Flanking Active TSS	Fetal Thymus	thymus
36	chr3:47020400-47021000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr3:47020400-47021000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr3:47020400-47021000	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr3:47020400-47021000	Flanking Active TSS	GM12878-XiMat	blood
40	chr3:47020400-47021000	Flanking Active TSS	K562	blood
41	chr3:47020400-47021000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr3:47020400-47021000	Flanking Active TSS	NHDF-Ad	bronchial
43	chr3:47020400-47021000	Flanking Active TSS	NHEK	skin
44	chr3:47020400-47021000	Flanking Active TSS	NHLF	lung
45	chr3:47020400-47021200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:47020400-47021600	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr3:47020400-47021600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr3:47020400-47021600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:47020400-47021600	Active TSS	Brain Germinal Matrix	brain
50	chr3:47020400-47021800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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