Variant report

Variant rs6442043
Chromosome Location chr3:46990390-46990391
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:46977000-47000000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:46978000-46990600 Strong transcription Fetal Stomach stomach
3 chr3:46979600-46994600 Genic enhancers Fetal Thymus thymus
4 chr3:46980200-46990800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr3:46982800-46992600 Enhancers Left Ventricle heart
6 chr3:46983000-46992600 Enhancers Small Intestine intestine
7 chr3:46983200-46992400 Enhancers Primary T killer naive cells fromperipheralblood blood
8 chr3:46983400-46991200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr3:46983600-46992600 Enhancers Psoas Muscle Psoas
10 chr3:46983600-46992600 Enhancers Right Atrium heart
11 chr3:46983600-46994000 Enhancers HUVEC blood vessel
12 chr3:46984200-46996400 Enhancers Liver Liver
13 chr3:46985000-46992000 Enhancers Pancreas Pancrea
14 chr3:46985000-46992600 Enhancers Right Ventricle heart
15 chr3:46985200-46991800 Genic enhancers Fetal Intestine Small intestine
16 chr3:46985600-46995200 Weak transcription ES-WA7 Cell Line embryonic stem cell
17 chr3:46985800-46990800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr3:46985800-46994200 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr3:46985800-47004400 Enhancers Primary T helper cells fromperipheralblood blood
20 chr3:46986000-46990800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr3:46986000-46991000 Weak transcription H1 Cell Line embryonic stem cell
22 chr3:46986200-46991000 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr3:46986400-46991200 Enhancers Placenta Amnion Placenta Amnion
24 chr3:46986600-46990600 Genic enhancers GM12878-XiMat blood
25 chr3:46986600-46990800 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr3:46986600-46990800 Enhancers Pancreatic Islets Pancreatic Islet
27 chr3:46986600-46991000 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr3:46986800-46990800 Weak transcription Brain Cingulate Gyrus brain
29 chr3:46986800-46992600 Enhancers Sigmoid Colon Sigmoid Colon
30 chr3:46987000-46990800 Weak transcription Brain Angular Gyrus brain
31 chr3:46987600-46994800 Enhancers Fetal Intestine Large intestine
32 chr3:46988000-46990800 Genic enhancers Fetal Muscle Trunk muscle
33 chr3:46988000-46991400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
34 chr3:46988000-46991400 Flanking Active TSS Hela-S3 cervix
35 chr3:46988000-46991800 Enhancers Colon Smooth Muscle Colon
36 chr3:46988000-46992400 Enhancers Fetal Heart heart
37 chr3:46988000-46992600 Enhancers Placenta Placenta
38 chr3:46988000-46994200 Genic enhancers Primary hematopoietic stem cells short term culture blood
39 chr3:46988000-47003200 Enhancers Primary monocytes fromperipheralblood blood
40 chr3:46988200-46991000 Enhancers Gastric stomach
41 chr3:46988200-46991200 Enhancers Thymus Thymus
42 chr3:46988200-46992000 Genic enhancers Fetal Muscle Leg muscle
43 chr3:46988200-46992600 Enhancers Lung lung
44 chr3:46988400-46991800 Enhancers Brain Hippocampus Middle brain
45 chr3:46988400-46994600 Genic enhancers Dnd41 blood
46 chr3:46988600-46990400 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr3:46988600-46990400 Genic enhancers Primary T cells from cord blood blood
48 chr3:46988600-46991000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr3:46988600-46991000 Enhancers NH-A brain
50 chr3:46988600-46991200 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --

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