Variant report

Variant	rs2891887
Chromosome Location	chr3:47075429-47075430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47074366..47076191-chr3:47079494..47081958,2	K562	blood:
2	chr3:47069157..47071799-chr3:47073550..47075911,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10461017	1.00[AMR][1000 genomes]
rs10461019	1.00[AMR][1000 genomes]
rs11130108	1.00[AMR][1000 genomes]
rs11130109	1.00[AMR][1000 genomes]
rs11706212	1.00[AMR][1000 genomes]
rs11708257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11709693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11709876	1.00[AMR][1000 genomes]
rs11713537	1.00[AMR][1000 genomes]
rs11928558	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12487763	0.89[AMR][1000 genomes]
rs13062185	1.00[AMR][1000 genomes]
rs13079416	0.89[AMR][1000 genomes]
rs13082531	1.00[AMR][1000 genomes]
rs1378818	1.00[AMR][1000 genomes]
rs1463394	1.00[AMR][1000 genomes]
rs1466272	0.89[AMR][1000 genomes]
rs1466273	0.89[AMR][1000 genomes]
rs1466274	0.89[AMR][1000 genomes]
rs1473382	0.89[AMR][1000 genomes]
rs1563431	0.89[AMR][1000 genomes]
rs1814564	0.89[AMR][1000 genomes]
rs1869870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124509	1.00[AMR][1000 genomes]
rs2124510	1.00[AMR][1000 genomes]
rs2385868	1.00[AMR][1000 genomes]
rs2385869	1.00[AMR][1000 genomes]
rs2891893	0.89[AMR][1000 genomes]
rs4282092	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4289375	0.89[AMR][1000 genomes]
rs4324490	1.00[AMR][1000 genomes]
rs4373094	1.00[AMR][1000 genomes]
rs4378998	1.00[AMR][1000 genomes]
rs4389512	1.00[AMR][1000 genomes]
rs4450857	1.00[AMR][1000 genomes]
rs4478107	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4522803	1.00[AMR][1000 genomes]
rs4525902	1.00[AMR][1000 genomes]
rs4543047	1.00[AMR][1000 genomes]
rs4682828	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4682832	0.89[AMR][1000 genomes]
rs4682833	1.00[AMR][1000 genomes]
rs4682835	1.00[AMR][1000 genomes]
rs4682836	1.00[AMR][1000 genomes]
rs4682838	0.89[AMR][1000 genomes]
rs4682840	0.89[AMR][1000 genomes]
rs4682841	1.00[AMR][1000 genomes]
rs4682843	0.89[AMR][1000 genomes]
rs4683277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4683279	0.89[AMR][1000 genomes]
rs4683283	1.00[AMR][1000 genomes]
rs4683284	1.00[AMR][1000 genomes]
rs4683285	1.00[AMR][1000 genomes]
rs4683286	1.00[AMR][1000 genomes]
rs4683289	0.89[AMR][1000 genomes]
rs4683290	1.00[AMR][1000 genomes]
rs4683291	1.00[AMR][1000 genomes]
rs4683292	0.89[AMR][1000 genomes]
rs4683293	1.00[AMR][1000 genomes]
rs6442041	1.00[AMR][1000 genomes]
rs6442042	0.89[AMR][1000 genomes]
rs6442043	0.89[AMR][1000 genomes]
rs6442044	1.00[AMR][1000 genomes]
rs6442047	1.00[AMR][1000 genomes]
rs6442048	1.00[AMR][1000 genomes]
rs6766676	1.00[AMR][1000 genomes]
rs6768169	0.89[AMR][1000 genomes]
rs6775797	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6780994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6785462	0.89[AMR][1000 genomes]
rs6804732	0.89[AMR][1000 genomes]
rs6806521	1.00[AMR][1000 genomes]
rs6809904	0.89[AMR][1000 genomes]
rs7621530	1.00[AMR][1000 genomes]
rs7624549	1.00[AMR][1000 genomes]
rs7625011	0.89[AMR][1000 genomes]
rs7630904	0.89[AMR][1000 genomes]
rs7638549	1.00[AMR][1000 genomes]
rs7643868	0.89[AMR][1000 genomes]
rs7649941	1.00[AMR][1000 genomes]
rs7650142	0.89[AMR][1000 genomes]
rs936177	0.89[AMR][1000 genomes]
rs936178	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs936179	0.89[AMR][1000 genomes]
rs936180	0.89[AMR][1000 genomes]
rs936181	1.00[AMR][1000 genomes]
rs936182	1.00[AMR][1000 genomes]
rs936186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810881	1.00[AMR][1000 genomes]
rs9812407	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9862711	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9878813	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9883152	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9990284	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
5	nsv997261	chr3:47054766-47133680	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47061000-47076200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:47061000-47079000	Weak transcription	Fetal Brain Male	brain
3	chr3:47061200-47076000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:47061200-47083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:47061400-47076000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:47061400-47076200	Weak transcription	HSMMtube	muscle
7	chr3:47062200-47076000	Weak transcription	Fetal Kidney	kidney
8	chr3:47062200-47077800	Weak transcription	Colonic Mucosa	Colon
9	chr3:47062800-47076400	Weak transcription	Fetal Brain Female	brain
10	chr3:47063200-47079000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:47064400-47076600	Weak transcription	Psoas Muscle	Psoas
12	chr3:47064400-47079000	Weak transcription	Pancreas	Pancrea
13	chr3:47064400-47079000	Weak transcription	Right Ventricle	heart
14	chr3:47064600-47076400	Weak transcription	Small Intestine	intestine
15	chr3:47064800-47076600	Weak transcription	Gastric	stomach
16	chr3:47065000-47077000	Weak transcription	Stomach Mucosa	stomach
17	chr3:47066800-47075600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:47066800-47075800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:47066800-47076000	Weak transcription	Brain Anterior Caudate	brain
20	chr3:47066800-47076000	Weak transcription	NHDF-Ad	bronchial
21	chr3:47066800-47076600	Weak transcription	Esophagus	oesophagus
22	chr3:47066800-47079000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:47067000-47075600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:47067000-47075800	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:47067000-47076200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:47067000-47076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:47067200-47076000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:47067200-47076000	Weak transcription	Brain Substantia Nigra	brain
29	chr3:47067200-47076000	Weak transcription	K562	blood
30	chr3:47067400-47076000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:47069000-47079000	Strong transcription	Dnd41	blood
32	chr3:47069400-47079000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr3:47069400-47079000	Strong transcription	Fetal Thymus	thymus
34	chr3:47069600-47079000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:47069600-47088200	Strong transcription	Liver	Liver
36	chr3:47069600-47088200	Strong transcription	Fetal Intestine Large	intestine
37	chr3:47069600-47089000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:47069800-47079000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:47069800-47086600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:47070200-47080600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:47070400-47076000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:47070400-47079000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:47070400-47079000	Weak transcription	Fetal Heart	heart
44	chr3:47070400-47089000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:47070600-47075800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr3:47070600-47076000	Weak transcription	HMEC	breast
47	chr3:47071000-47076000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:47071200-47075600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:47071200-47075800	Weak transcription	Osteobl	bone
50	chr3:47071200-47078200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links