Variant report

Variant rs4478107
Chromosome Location chr3:47029236-47029237
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:47021800-47036000 Weak transcription Ovary ovary
2 chr3:47022000-47030200 Weak transcription Aorta Aorta
3 chr3:47022200-47030200 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr3:47022400-47029600 Weak transcription Liver Liver
5 chr3:47022400-47039800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr3:47022400-47041600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr3:47022400-47041800 Weak transcription Brain Germinal Matrix brain
8 chr3:47022400-47042000 Weak transcription Brain Substantia Nigra brain
9 chr3:47022600-47049000 Weak transcription Hela-S3 cervix
10 chr3:47022600-47050600 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr3:47023200-47042000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr3:47023600-47035600 Weak transcription Brain Anterior Caudate brain
13 chr3:47023800-47029600 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr3:47024200-47029400 Weak transcription Stomach Smooth Muscle stomach
15 chr3:47024200-47030400 Weak transcription Fetal Brain Female brain
16 chr3:47024400-47030000 Enhancers Stomach Mucosa stomach
17 chr3:47024400-47039600 Weak transcription HepG2 liver
18 chr3:47024600-47031800 Weak transcription H9 Cell Line embryonic stem cell
19 chr3:47025800-47031800 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr3:47026000-47029400 Enhancers Placenta Amnion Placenta Amnion
21 chr3:47026000-47029800 Genic enhancers Fetal Intestine Small intestine
22 chr3:47026200-47029800 Enhancers Lung lung
23 chr3:47026200-47030000 Enhancers Sigmoid Colon Sigmoid Colon
24 chr3:47026200-47030200 Enhancers Gastric stomach
25 chr3:47026600-47029600 Enhancers Skeletal Muscle Male skeletal muscle
26 chr3:47026600-47029800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr3:47026600-47030000 Enhancers Right Ventricle heart
28 chr3:47026600-47033200 Enhancers Placenta Placenta
29 chr3:47026800-47029400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
30 chr3:47026800-47031000 Enhancers Left Ventricle heart
31 chr3:47027000-47030200 Enhancers Spleen Spleen
32 chr3:47027000-47032000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
33 chr3:47027200-47029600 Enhancers HMEC breast
34 chr3:47027200-47029800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr3:47027400-47029400 Enhancers Fetal Intestine Large intestine
36 chr3:47027600-47029400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr3:47027600-47030200 Enhancers A549 lung
38 chr3:47028000-47029400 Enhancers iPS-15b Cell Line embryonic stem cell
39 chr3:47028000-47029400 Enhancers Adipose Nuclei Adipose
40 chr3:47028000-47029800 Enhancers Fetal Muscle Leg muscle
41 chr3:47028000-47030200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr3:47028000-47032000 Enhancers HUVEC blood vessel
43 chr3:47028200-47029400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr3:47028200-47029400 Enhancers Esophagus oesophagus
45 chr3:47028200-47029600 Flanking Active TSS Fetal Thymus thymus
46 chr3:47028200-47029600 Flanking Active TSS Dnd41 blood
47 chr3:47028200-47030200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
48 chr3:47028200-47030400 Enhancers ES-I3 Cell Line embryonic stem cell
49 chr3:47028200-47030600 Enhancers Fetal Muscle Trunk muscle
50 chr3:47028400-47029800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --

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