Variant report

Variant rs1378818
Chromosome Location chr3:46989162-46989163
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:46976200-46990200 Weak transcription Fetal Brain Male brain
2 chr3:46977000-47000000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:46978000-46990600 Strong transcription Fetal Stomach stomach
4 chr3:46979400-46989200 Weak transcription NHDF-Ad bronchial
5 chr3:46979600-46994600 Genic enhancers Fetal Thymus thymus
6 chr3:46980200-46990800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr3:46982800-46992600 Enhancers Left Ventricle heart
8 chr3:46983000-46989400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr3:46983000-46992600 Enhancers Small Intestine intestine
10 chr3:46983200-46989400 Enhancers HMEC breast
11 chr3:46983200-46989600 Genic enhancers Fetal Adrenal Gland Adrenal Gland
12 chr3:46983200-46992400 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr3:46983400-46991200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr3:46983600-46992600 Enhancers Psoas Muscle Psoas
15 chr3:46983600-46992600 Enhancers Right Atrium heart
16 chr3:46983600-46994000 Enhancers HUVEC blood vessel
17 chr3:46984000-46989200 Weak transcription Fetal Brain Female brain
18 chr3:46984000-46989400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr3:46984200-46996400 Enhancers Liver Liver
20 chr3:46984800-46989200 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
21 chr3:46984800-46989400 Enhancers Primary T killer memory cells from peripheral blood blood
22 chr3:46985000-46989400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr3:46985000-46989800 Enhancers Brain Substantia Nigra brain
24 chr3:46985000-46992000 Enhancers Pancreas Pancrea
25 chr3:46985000-46992600 Enhancers Right Ventricle heart
26 chr3:46985200-46991800 Genic enhancers Fetal Intestine Small intestine
27 chr3:46985600-46995200 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr3:46985800-46990000 Genic enhancers Primary B cells from peripheral blood blood
29 chr3:46985800-46990800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr3:46985800-46994200 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr3:46985800-47004400 Enhancers Primary T helper cells fromperipheralblood blood
32 chr3:46986000-46990800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr3:46986000-46991000 Weak transcription H1 Cell Line embryonic stem cell
34 chr3:46986200-46989200 Enhancers Primary T helper naive cells from peripheral blood blood
35 chr3:46986200-46989600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
36 chr3:46986200-46991000 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr3:46986400-46991200 Enhancers Placenta Amnion Placenta Amnion
38 chr3:46986600-46990600 Genic enhancers GM12878-XiMat blood
39 chr3:46986600-46990800 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr3:46986600-46990800 Enhancers Pancreatic Islets Pancreatic Islet
41 chr3:46986600-46991000 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr3:46986800-46989400 Enhancers Primary T cells fromperipheralblood blood
43 chr3:46986800-46990200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr3:46986800-46990800 Weak transcription Brain Cingulate Gyrus brain
45 chr3:46986800-46992600 Enhancers Sigmoid Colon Sigmoid Colon
46 chr3:46987000-46990000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr3:46987000-46990800 Weak transcription Brain Angular Gyrus brain
48 chr3:46987200-46990000 Genic enhancers Spleen Spleen
49 chr3:46987400-46989200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr3:46987400-46989200 Enhancers Primary neutrophils fromperipheralblood blood

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