Variant report

Variant	rs9637426
Chromosome Location	chr3:47011435-47011436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46974607..46976308-chr3:47009636..47011674,2	K562	blood:
2	chr3:46992711..46994503-chr3:47010548..47012316,2	K562	blood:
3	chr3:46995234..46997010-chr3:47011388..47013253,2	K562	blood:
4	chr3:46997668..47000138-chr3:47008778..47011598,2	MCF-7	breast:
5	chr3:47001947..47004283-chr3:47011185..47013637,2	MCF-7	breast:
6	chr3:47011340..47013025-chr3:47015501..47017285,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11709876	0.82[AFR][1000 genomes]
rs12487763	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13079416	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1466272	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1466273	0.81[AMR][1000 genomes]
rs1466274	0.81[AMR][1000 genomes]
rs1473382	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1563431	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1814564	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2124510	0.81[AFR][1000 genomes]
rs2385868	0.82[AFR][1000 genomes]
rs4289375	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4324490	0.82[AFR][1000 genomes]
rs4378998	0.82[AFR][1000 genomes]
rs4389512	0.82[AFR][1000 genomes]
rs4522803	0.88[AFR][1000 genomes]
rs4543047	0.82[AFR][1000 genomes]
rs4682832	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4682834	0.82[AFR][1000 genomes]
rs4682838	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4682843	0.81[AMR][1000 genomes]
rs4683279	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4683289	0.81[AMR][1000 genomes]
rs4683292	0.81[AMR][1000 genomes]
rs6442042	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6442043	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6442047	0.82[AFR][1000 genomes]
rs6442048	0.81[AFR][1000 genomes]
rs6768169	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6785462	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6804732	0.81[AMR][1000 genomes]
rs6806521	0.82[AFR][1000 genomes]
rs6809904	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7630904	0.81[AMR][1000 genomes]
rs7643868	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7650142	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs936177	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs936179	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs936180	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1012682	chr3:46973552-47016357	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1009396	chr3:46994991-47048166	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47002200-47012000	Weak transcription	Osteobl	bone
2	chr3:47002400-47012000	Weak transcription	NHLF	lung
3	chr3:47002400-47013200	Weak transcription	NH-A	brain
4	chr3:47003200-47011800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:47003200-47012000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:47003200-47012000	Weak transcription	NHDF-Ad	bronchial
7	chr3:47003200-47015800	Weak transcription	Fetal Brain Male	brain
8	chr3:47003200-47016800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:47003400-47012000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:47004400-47011800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:47004800-47011800	Weak transcription	HUVEC	blood vessel
12	chr3:47004800-47012000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:47004800-47012600	Weak transcription	HSMM	muscle
14	chr3:47004800-47017200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:47004800-47017200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:47006400-47012600	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr3:47006400-47013000	Genic enhancers	K562	blood
18	chr3:47006400-47013200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:47006400-47013600	Genic enhancers	Fetal Intestine Small	intestine
20	chr3:47006600-47013200	Strong transcription	Dnd41	blood
21	chr3:47006600-47013400	Genic enhancers	Primary T cells fromperipheralblood	blood
22	chr3:47006600-47014400	Genic enhancers	Fetal Thymus	thymus
23	chr3:47006600-47017000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr3:47006800-47012600	Genic enhancers	Primary B cells from cord blood	blood
25	chr3:47006800-47013200	Genic enhancers	Esophagus	oesophagus
26	chr3:47006800-47013600	Genic enhancers	Lung	lung
27	chr3:47006800-47014600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:47007000-47012000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:47007000-47017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:47007200-47013800	Enhancers	Fetal Heart	heart
31	chr3:47007200-47017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:47007400-47012400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:47007400-47012800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:47007400-47012800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr3:47007400-47013800	Strong transcription	Fetal Stomach	stomach
36	chr3:47007600-47012000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr3:47007600-47012000	Weak transcription	Fetal Kidney	kidney
38	chr3:47007600-47012200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:47007600-47012400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:47007600-47012600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:47007600-47012800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr3:47007600-47013800	Enhancers	Pancreas	Pancrea
43	chr3:47007600-47014600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr3:47007600-47014800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:47007600-47016200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:47007600-47017200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:47007600-47017200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:47007600-47017400	Weak transcription	HSMMtube	muscle
49	chr3:47007800-47012600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr3:47007800-47013600	Enhancers	Adipose Nuclei	Adipose

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