Variant report

Variant	rs4864766
Chromosome Location	chr4:54366971-54366972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10008334	1.00[CEU][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10021772	0.88[LWK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs11133274	0.84[GIH][hapmap]
rs11737139	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11944047	1.00[CEU][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12511088	0.82[YRI][hapmap]
rs12511253	0.82[YRI][hapmap]
rs12642437	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13117240	1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13119372	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1399241	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2412489	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28404076	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4864773	0.86[YRI][hapmap]
rs59585683	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6554109	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6810557	0.82[CEU][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6834099	1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6835629	0.91[CEU][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4864766	EXOC1	cis	cerebellum	SCAN
rs4864766	PIGW	trans	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
3	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
5	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
7	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:54355200-54378600	Weak transcription	Fetal Brain Male	brain
9	chr4:54356600-54373400	Weak transcription	Right Atrium	heart
10	chr4:54362400-54374200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:54362600-54368000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:54362800-54373000	Weak transcription	Liver	Liver
13	chr4:54362800-54376000	Weak transcription	Brain Angular Gyrus	brain
14	chr4:54363200-54373400	Weak transcription	Gastric	stomach
15	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
16	chr4:54363800-54371400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:54363800-54371800	Weak transcription	Fetal Intestine Large	intestine
18	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:54364200-54367600	Weak transcription	Placenta	Placenta
20	chr4:54364200-54373200	Weak transcription	Adipose Nuclei	Adipose
21	chr4:54364200-54373200	Weak transcription	NHDF-Ad	bronchial
22	chr4:54364400-54368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:54364400-54371800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:54365200-54370600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:54365400-54374200	Weak transcription	Fetal Stomach	stomach
26	chr4:54365600-54372000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:54365600-54374000	Weak transcription	Aorta	Aorta
28	chr4:54365800-54374000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:54366200-54368400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:54366600-54367600	Weak transcription	Fetal Intestine Small	intestine
31	chr4:54366600-54367600	Weak transcription	Ovary	ovary
32	chr4:54366600-54373200	Weak transcription	HSMM	muscle
33	chr4:54366600-54373400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:54366600-54373400	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:54366600-54373800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:54366600-54384200	Weak transcription	Pancreas	Pancrea
37	chr4:54366800-54367200	Enhancers	Fetal Kidney	kidney
38	chr4:54366800-54373400	Weak transcription	HSMMtube	muscle

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