Variant report

Variant	rs4864773
Chromosome Location	chr4:54378522-54378523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54378239..54380309-chr4:54383066..54385489,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10012682	1.00[CEU][hapmap]
rs10012857	1.00[CEU][hapmap]
rs10014172	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs10019914	1.00[CEU][hapmap]
rs10021659	1.00[CEU][hapmap]
rs10022429	1.00[CEU][hapmap]
rs10022604	1.00[CEU][hapmap]
rs10023613	1.00[CEU][hapmap]
rs10024153	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs10025091	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs10027090	1.00[CEU][hapmap]
rs10028131	1.00[CEU][hapmap]
rs10517295	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs12644212	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs12645252	1.00[CEU][hapmap]
rs12645287	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs12645694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12649335	1.00[CEU][hapmap]
rs13435378	1.00[CEU][hapmap]
rs1473911	1.00[CEU][hapmap]
rs1481816	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs15834	1.00[CEU][hapmap]
rs17082681	1.00[CEU][hapmap]
rs17082726	1.00[CEU][hapmap]
rs17082741	1.00[CEU][hapmap]
rs17082811	1.00[CEU][hapmap]
rs17082837	1.00[CEU][hapmap]
rs17082847	1.00[CEU][hapmap]
rs17326196	1.00[CEU][hapmap]
rs17839071	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs2048709	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs2054589	1.00[CEU][hapmap]
rs2137895	1.00[CEU][hapmap]
rs2412487	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs28575132	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs28658460	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs28716804	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864766	0.86[YRI][hapmap]
rs60708527	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60814046	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6816889	1.00[CEU][hapmap]
rs9312640	1.00[CEU][hapmap]
rs9996049	1.00[CEU][hapmap]
rs9997905	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv21302	chr4:54375399-54378966	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
2	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:54355200-54378600	Weak transcription	Fetal Brain Male	brain
4	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
5	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:54366600-54384200	Weak transcription	Pancreas	Pancrea
7	chr4:54372800-54388400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:54374400-54399000	Weak transcription	Fetal Intestine Large	intestine
9	chr4:54374400-54421000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:54374800-54393600	Weak transcription	Placenta	Placenta
11	chr4:54375000-54393600	Weak transcription	Gastric	stomach
12	chr4:54375000-54398800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:54377600-54384400	Weak transcription	Right Atrium	heart
14	chr4:54377600-54412200	Weak transcription	Aorta	Aorta

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