Variant report

Variant	rs12645694
Chromosome Location	chr4:54365307-54365308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10008334	0.92[YRI][hapmap]
rs10012682	1.00[CEU][hapmap]
rs10012857	1.00[CEU][hapmap]
rs10014172	1.00[CEU][hapmap];0.85[GIH][hapmap];0.88[YRI][hapmap]
rs10019914	1.00[CEU][hapmap]
rs10021659	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs10022429	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs10022604	1.00[CEU][hapmap]
rs10023613	1.00[CEU][hapmap]
rs10024153	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs10025091	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs10027090	1.00[CEU][hapmap]
rs10028131	1.00[CEU][hapmap]
rs10517295	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs11944047	0.82[YRI][hapmap]
rs12644212	1.00[CEU][hapmap];0.85[GIH][hapmap];0.96[YRI][hapmap]
rs12645252	1.00[CEU][hapmap]
rs12645287	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs12649335	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs13117240	0.82[YRI][hapmap]
rs13435378	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs1473911	1.00[CEU][hapmap]
rs1481816	1.00[CEU][hapmap];0.85[GIH][hapmap];0.84[MKK][hapmap]
rs15834	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs17082681	1.00[CEU][hapmap]
rs17082726	1.00[CEU][hapmap]
rs17082741	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs17082811	1.00[CEU][hapmap]
rs17082837	1.00[CEU][hapmap]
rs17082847	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs17326196	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs17839071	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs2048709	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs2054589	1.00[CEU][hapmap]
rs2137895	1.00[CEU][hapmap]
rs2412487	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs28575132	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs28658460	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs28716804	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4864773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56331163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60708527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60814046	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6811200	0.81[MKK][hapmap];0.80[YRI][hapmap]
rs6816889	1.00[CEU][hapmap]
rs6834099	0.96[YRI][hapmap]
rs6835629	0.88[YRI][hapmap]
rs9312640	1.00[CEU][hapmap]
rs9996049	1.00[CEU][hapmap]
rs9997905	1.00[CEU][hapmap]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
3	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
5	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
7	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:54355200-54378600	Weak transcription	Fetal Brain Male	brain
9	chr4:54356600-54373400	Weak transcription	Right Atrium	heart
10	chr4:54358600-54365400	Weak transcription	Lung	lung
11	chr4:54362000-54366600	Enhancers	Ovary	ovary
12	chr4:54362400-54374200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:54362600-54368000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr4:54362800-54366600	Enhancers	Fetal Muscle Leg	muscle
15	chr4:54362800-54373000	Weak transcription	Liver	Liver
16	chr4:54362800-54376000	Weak transcription	Brain Angular Gyrus	brain
17	chr4:54363200-54366200	Weak transcription	Pancreas	Pancrea
18	chr4:54363200-54373400	Weak transcription	Gastric	stomach
19	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
20	chr4:54363400-54365400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:54363400-54365400	Enhancers	Fetal Stomach	stomach
22	chr4:54363400-54366800	Enhancers	HSMMtube	muscle
23	chr4:54363800-54366200	Weak transcription	Fetal Kidney	kidney
24	chr4:54363800-54371400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:54363800-54371800	Weak transcription	Fetal Intestine Large	intestine
26	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:54364000-54365400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:54364000-54366200	Weak transcription	Fetal Intestine Small	intestine
29	chr4:54364200-54365800	Weak transcription	HSMM	muscle
30	chr4:54364200-54366000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:54364200-54367600	Weak transcription	Placenta	Placenta
32	chr4:54364200-54373200	Weak transcription	Adipose Nuclei	Adipose
33	chr4:54364200-54373200	Weak transcription	NHDF-Ad	bronchial
34	chr4:54364400-54366000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr4:54364400-54368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:54364400-54371800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr4:54364600-54365800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr4:54364800-54365600	Enhancers	Aorta	Aorta
39	chr4:54365000-54365600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:54365200-54370600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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