Variant report

Variant	rs10012682
Chromosome Location	chr4:54219247-54219248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54218274..54220332-chr4:54242653..54244502,2	K562	blood:

Variant related genes	Relation type
ENSG00000145216	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10005221	0.91[EUR][1000 genomes]
rs10006090	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10008334	0.87[YRI][hapmap]
rs10011631	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012857	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10014172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10019914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10021659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10022429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10022604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10023613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10024153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10024702	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10025091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10027090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10028131	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10034035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12642401	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12644212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12645252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12645287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12645694	1.00[CEU][hapmap]
rs12649258	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12649335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13435297	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13435378	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1383982	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1473911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1481816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs15834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17082492	1.00[CEU][hapmap]
rs17082681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17082726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17082741	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17082744	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17082837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17082847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17326196	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17839071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2048709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2054589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2054590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2054591	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2137895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2175906	0.86[ASN][1000 genomes]
rs2412487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28396593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28403386	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28414224	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28416355	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28417191	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28418269	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28454103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28459811	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28460231	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28506190	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28538880	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28555544	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28575132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28588270	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28633646	0.84[ASN][1000 genomes]
rs28647402	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28654213	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28658460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28729231	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28778298	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28778963	0.84[AMR][1000 genomes]
rs28831138	0.88[AMR][1000 genomes]
rs28835433	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28848852	0.91[ASN][1000 genomes]
rs3762877	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3762878	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3762879	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4864773	1.00[CEU][hapmap]
rs55862905	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56345181	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56997859	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57090564	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57165925	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57587034	0.83[AMR][1000 genomes]
rs57616867	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57717970	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58566208	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59213600	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59311047	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60072918	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62323221	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323222	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323223	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62325171	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62325218	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62325968	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62325970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6816889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6835629	0.86[YRI][hapmap]
rs73154934	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73154945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73156086	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7680607	1.00[CEU][hapmap]
rs9312640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9992110	1.00[CEU][hapmap]
rs9995110	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9996049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9996299	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9997905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:54201200-54220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:54202200-54226000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:54206600-54220200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:54210400-54225600	Weak transcription	Small Intestine	intestine
7	chr4:54211600-54219600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:54211600-54220200	Weak transcription	Fetal Stomach	stomach
9	chr4:54212000-54220600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:54212000-54227200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:54212200-54220800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:54212800-54219600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:54213200-54220200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr4:54213600-54228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:54213800-54230400	Weak transcription	Fetal Kidney	kidney
16	chr4:54214000-54221800	Weak transcription	Ovary	ovary
17	chr4:54214000-54230800	Weak transcription	Aorta	Aorta
18	chr4:54214000-54231200	Weak transcription	Lung	lung
19	chr4:54214200-54219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:54214200-54219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:54214200-54220200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:54214200-54221800	Weak transcription	Pancreas	Pancrea
23	chr4:54214200-54221800	Weak transcription	Psoas Muscle	Psoas
24	chr4:54214200-54224000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:54214200-54228200	Weak transcription	Esophagus	oesophagus
26	chr4:54214200-54228200	Weak transcription	Fetal Brain Female	brain
27	chr4:54214200-54228200	Weak transcription	NH-A	brain
28	chr4:54214200-54228800	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:54214200-54229000	Weak transcription	HUVEC	blood vessel
30	chr4:54214200-54230000	Weak transcription	Fetal Heart	heart
31	chr4:54214200-54230000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:54214200-54230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:54214200-54230800	Weak transcription	Brain Angular Gyrus	brain
34	chr4:54214200-54230800	Weak transcription	Brain Substantia Nigra	brain
35	chr4:54214200-54230800	Weak transcription	Fetal Lung	lung
36	chr4:54214200-54230800	Weak transcription	Right Ventricle	heart
37	chr4:54214200-54230800	Weak transcription	HSMMtube	muscle
38	chr4:54214200-54231000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr4:54214200-54231000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr4:54214200-54231200	Weak transcription	Spleen	Spleen
41	chr4:54214400-54224400	Weak transcription	A549	lung
42	chr4:54214400-54230200	Weak transcription	HMEC	breast
43	chr4:54214600-54230000	Weak transcription	Brain Anterior Caudate	brain
44	chr4:54214800-54220000	Weak transcription	Brain Hippocampus Middle	brain
45	chr4:54214800-54220200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:54214800-54230200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr4:54215000-54226800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:54215200-54219800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:54215400-54220000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:54215400-54220200	Strong transcription	Primary T cells from cord blood	blood

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