Variant report

Variant	rs15834
Chromosome Location	chr4:54328671-54328672
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10006090	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10008334	0.85[YRI][hapmap]
rs10011631	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10012682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10012857	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10014172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10019914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10021659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10022429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10022604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10023613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10024153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10024702	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10025091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034035	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10517295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11944047	0.81[YRI][hapmap]
rs12642401	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12644212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645694	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs12649258	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12649335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12651687	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13435297	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13435378	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1383982	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1473911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1481822	0.83[YRI][hapmap]
rs17082557	0.83[YRI][hapmap]
rs17082681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082741	1.00[CEU][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082744	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17082811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17326196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17839071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2048709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2054589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2054591	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2137894	0.85[ASN][1000 genomes]
rs2137895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175906	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396593	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28403386	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28414224	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416355	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28417191	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28418269	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28454103	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28459811	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28460231	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28506190	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28538880	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28555544	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28588270	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633646	0.88[ASN][1000 genomes]
rs28647402	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28654213	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28658460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28729231	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778298	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28835433	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28848852	0.95[ASN][1000 genomes]
rs34060994	0.89[ASN][1000 genomes]
rs3762877	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3762878	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3762879	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4864773	1.00[CEU][hapmap]
rs55862905	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56331163	0.80[ASN][1000 genomes]
rs56345181	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56997859	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57090564	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57165925	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57587034	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57616867	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57717970	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58566208	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59213600	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59311047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60072918	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60708527	0.82[AFR][1000 genomes]
rs62323221	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62323222	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62323223	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62325171	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325218	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62325968	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62325970	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6811200	0.83[YRI][hapmap]
rs6816889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6834099	0.88[YRI][hapmap]
rs6835629	0.88[YRI][hapmap]
rs6852755	0.83[YRI][hapmap]
rs73154934	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73154945	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73156086	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9968395	0.89[ASN][1000 genomes]
rs9995110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9996299	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
2	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
5	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
6	chr4:54297600-54329600	Strong transcription	Dnd41	blood
7	chr4:54298600-54329600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:54316400-54329200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:54316800-54332600	Weak transcription	Esophagus	oesophagus
10	chr4:54317200-54331400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:54317400-54332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:54317800-54329600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:54318000-54329200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr4:54318000-54329600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:54318200-54329200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr4:54318200-54329200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:54318200-54329800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:54318200-54330200	Strong transcription	Placenta	Placenta
19	chr4:54318400-54329000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:54318400-54329800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:54318400-54329800	Strong transcription	Primary B cells from cord blood	blood
22	chr4:54318600-54329400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr4:54318600-54329600	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr4:54318600-54330000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:54318600-54330000	Strong transcription	Fetal Thymus	thymus
26	chr4:54318600-54330400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr4:54318800-54329600	Strong transcription	Adipose Nuclei	Adipose
28	chr4:54318800-54329800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:54318800-54330200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:54319000-54329400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:54319000-54329600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr4:54319000-54330200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:54320000-54332600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:54320000-54332600	Weak transcription	Aorta	Aorta
35	chr4:54320000-54332800	Weak transcription	Fetal Stomach	stomach
36	chr4:54320000-54342000	Weak transcription	Pancreas	Pancrea
37	chr4:54320000-54353200	Weak transcription	Gastric	stomach
38	chr4:54321000-54332600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:54321200-54329800	Weak transcription	Right Ventricle	heart
40	chr4:54321200-54331800	Weak transcription	Ovary	ovary
41	chr4:54321400-54329000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:54321400-54329200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:54321400-54341800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:54321800-54330800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr4:54321800-54339800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:54322000-54331200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:54322200-54329200	Weak transcription	Small Intestine	intestine
48	chr4:54322200-54330600	Weak transcription	Thymus	Thymus
49	chr4:54322200-54331400	Weak transcription	Brain Anterior Caudate	brain
50	chr4:54322200-54331600	Weak transcription	HSMMtube	muscle

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