Variant report

Variant	rs10011631
Chromosome Location	chr4:54245499-54245500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:54243000-54245752	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr4:54244740-54245534	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT1	chr4:54245471-54245551	GM12878	blood:	n/a	n/a
4	POLR2A	chr4:54244702-54245751	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54230756..54233682-chr4:54240977..54245711,5	MCF-7	breast:
2	chr4:54245086..54247077-chr4:54304950..54306474,2	K562	blood:

Variant related genes	Relation type
FIP1L1	TF binding region
ENSG00000184178	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10006090	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012682	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012857	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014172	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019914	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021659	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022429	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10022604	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023613	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10024153	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024702	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025091	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027090	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028131	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10034035	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10517295	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642401	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644212	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12645252	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645287	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649258	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649335	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435297	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13435378	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1383982	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473911	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1481816	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs15834	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082681	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082726	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082741	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082744	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17082811	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082837	0.89[ASN][1000 genomes]
rs17082847	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17326196	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17839071	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2054589	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054590	1.00[ASN][1000 genomes]
rs2054591	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137895	0.89[ASN][1000 genomes]
rs2175906	0.89[ASN][1000 genomes]
rs2412487	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28396593	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28403386	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28414224	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416355	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417191	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418269	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28454103	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28459811	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460231	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28506190	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28538880	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28555544	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575132	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588270	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28633646	0.88[ASN][1000 genomes]
rs28647402	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28654213	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28658460	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729231	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28778298	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778963	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28831138	0.88[AMR][1000 genomes]
rs28835433	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28848852	0.95[ASN][1000 genomes]
rs3762877	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762878	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762879	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55862905	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56345181	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56997859	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57090564	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57165925	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57587034	0.83[AMR][1000 genomes]
rs57616867	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57717970	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58566208	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59213600	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59311047	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60072918	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62323221	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323222	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323223	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325171	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325218	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325968	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62325970	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816889	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73154934	0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73154945	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156086	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9312640	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995110	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9996049	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9996299	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997905	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54243000-54247800	Active TSS	GM12878-XiMat	blood
2	chr4:54243200-54245600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr4:54243200-54245800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:54243200-54246000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:54243200-54246200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:54243200-54246200	Active TSS	Ovary	ovary
7	chr4:54243200-54246200	Active TSS	Thymus	Thymus
8	chr4:54243200-54246400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:54243400-54245600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:54243400-54245600	Active TSS	A549	lung
11	chr4:54243400-54245800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:54243400-54245800	Active TSS	NHDF-Ad	bronchial
13	chr4:54243400-54246000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:54243400-54246200	Active TSS	Aorta	Aorta
15	chr4:54243600-54245600	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr4:54243600-54245800	Active TSS	Muscle Satellite Cultured Cells	--
17	chr4:54243600-54245800	Active TSS	HMEC	breast
18	chr4:54244400-54245600	Active TSS	Right Atrium	heart
19	chr4:54244400-54245800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:54244600-54245600	Flanking Active TSS	HUVEC	blood vessel
21	chr4:54244600-54245800	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr4:54244600-54245800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:54244600-54246000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr4:54244600-54246000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:54244600-54246000	Weak transcription	Small Intestine	intestine
26	chr4:54244600-54250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:54244600-54250200	Weak transcription	Left Ventricle	heart
28	chr4:54244600-54256000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:54244600-54256000	Weak transcription	Esophagus	oesophagus
30	chr4:54244600-54256000	Weak transcription	Gastric	stomach
31	chr4:54244600-54256000	Weak transcription	Lung	lung
32	chr4:54244600-54256200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
35	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
36	chr4:54244800-54245600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr4:54244800-54245600	Flanking Active TSS	Fetal Lung	lung
38	chr4:54244800-54245800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:54244800-54245800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr4:54244800-54246000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:54244800-54246000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr4:54244800-54246000	Flanking Active TSS	Dnd41	blood
43	chr4:54244800-54246200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:54244800-54246400	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr4:54244800-54250200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr4:54244800-54256000	Weak transcription	Stomach Mucosa	stomach
47	chr4:54245000-54245600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:54245000-54245600	Weak transcription	Brain Hippocampus Middle	brain
49	chr4:54245000-54245600	Enhancers	Rectal Smooth Muscle	rectum
50	chr4:54245000-54245800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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