Variant report

Variant	rs57616867
Chromosome Location	chr4:54259617-54259618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54231373..54233173-chr4:54258166..54260670,2	K562	blood:
2	chr4:54259354..54262272-chr4:54263362..54265634,3	K562	blood:
3	chr4:54256491..54258052-chr4:54258208..54260279,2	K562	blood:
4	chr4:54253675..54256529-chr4:54257967..54261148,3	K562	blood:

Variant related genes	Relation type
ENSG00000184178	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10006090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10011631	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10012682	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10012857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014172	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019914	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10021659	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10022429	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10022604	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10023613	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10024153	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024702	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10025091	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027090	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028131	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10034035	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10517295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642401	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12644212	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12645252	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645287	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649335	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12651687	0.83[AMR][1000 genomes]
rs13435297	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13435378	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1383982	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1473911	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1481816	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs15834	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082681	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082726	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082741	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082744	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17082811	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082837	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082847	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17326196	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17839071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2054589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054590	1.00[ASN][1000 genomes]
rs2054591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137895	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2175906	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2412487	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28396593	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28403386	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28414224	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416355	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417191	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28454103	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28459811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28460231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28506190	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28538880	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28555544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28588270	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28633646	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28647402	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28654213	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28658460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28729231	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28778298	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778963	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28831138	0.80[AMR][1000 genomes]
rs28835433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28848852	0.95[ASN][1000 genomes]
rs3762877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3762878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3762879	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55862905	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56345181	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56997859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57090564	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57165925	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57587034	0.83[AMR][1000 genomes]
rs57717970	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58566208	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59213600	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59311047	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60072918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62323221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325171	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62325968	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62325970	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6816889	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73154934	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73154945	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73156086	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9312640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995110	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9996049	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9996299	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997905	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
3	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
4	chr4:54245000-54271400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
6	chr4:54245600-54269600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:54245600-54270200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:54246000-54270200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:54246000-54270200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:54246200-54276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
12	chr4:54246400-54259800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:54246400-54259800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr4:54246600-54270200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
16	chr4:54247400-54260800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:54247400-54270200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr4:54247600-54262200	Strong transcription	K562	blood
19	chr4:54247600-54269800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:54247600-54270200	Strong transcription	Dnd41	blood
21	chr4:54248000-54270000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr4:54248200-54270000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr4:54248200-54270200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr4:54248400-54260800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:54248400-54269400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:54248400-54269600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:54248400-54269800	Strong transcription	Fetal Thymus	thymus
28	chr4:54248400-54270000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:54248400-54270000	Strong transcription	NHDF-Ad	bronchial
30	chr4:54248400-54270200	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr4:54248400-54270200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:54249000-54270200	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:54249400-54259800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr4:54250600-54259800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:54250800-54269200	Strong transcription	Primary B cells from cord blood	blood
36	chr4:54252800-54270200	Strong transcription	Primary T cells from cord blood	blood
37	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
38	chr4:54253600-54293400	Weak transcription	HSMMtube	muscle
39	chr4:54255200-54260600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:54256600-54262000	Weak transcription	Fetal Intestine Small	intestine
42	chr4:54256600-54262200	Weak transcription	Fetal Stomach	stomach
43	chr4:54256600-54263400	Weak transcription	Ovary	ovary
44	chr4:54256600-54266600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr4:54256600-54268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:54256600-54269800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr4:54256600-54269800	Weak transcription	Esophagus	oesophagus
48	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
49	chr4:54256600-54319200	Weak transcription	Gastric	stomach
50	chr4:54256800-54261400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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