The 2.0 version of rSNPBase

Variant report

Variant rs28848852
Chromosome Location chr4:54275149-54275150
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54244600-54310600 Weak transcription Spleen Spleen
2 chr4:54244600-54319200 Weak transcription Pancreas Pancrea
3 chr4:54245400-54279400 Weak transcription Right Ventricle heart
4 chr4:54246200-54276200 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr4:54246200-54319200 Weak transcription Aorta Aorta
6 chr4:54246600-54311200 Weak transcription Small Intestine intestine
7 chr4:54253400-54327200 Weak transcription Colonic Mucosa Colon
8 chr4:54253600-54293400 Weak transcription HSMMtube muscle
9 chr4:54256400-54294200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr4:54256600-54306200 Weak transcription Stomach Mucosa stomach
11 chr4:54256600-54319200 Weak transcription Gastric stomach
12 chr4:54256800-54275400 Weak transcription Lung lung
13 chr4:54256800-54275600 Weak transcription H9 Cell Line embryonic stem cell
14 chr4:54256800-54279000 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr4:54257600-54296000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr4:54263800-54295000 Weak transcription Placenta Amnion Placenta Amnion
17 chr4:54264000-54279600 Weak transcription Fetal Heart heart
18 chr4:54264400-54294800 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr4:54266400-54293600 Weak transcription NHEK skin
20 chr4:54266600-54279400 Weak transcription Brain Angular Gyrus brain
21 chr4:54266800-54275600 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr4:54267200-54294600 Weak transcription Hela-S3 cervix
23 chr4:54267800-54302400 Weak transcription Psoas Muscle Psoas
24 chr4:54268000-54295000 Weak transcription Fetal Brain Male brain
25 chr4:54268000-54310400 Weak transcription Rectal Smooth Muscle rectum
26 chr4:54268000-54327600 Weak transcription Colon Smooth Muscle Colon
27 chr4:54268200-54276200 Weak transcription Fetal Kidney kidney
28 chr4:54268200-54280800 Weak transcription HUVEC blood vessel
29 chr4:54268400-54280600 Weak transcription HSMM muscle
30 chr4:54268400-54319800 Weak transcription A549 lung
31 chr4:54268600-54287400 Weak transcription Brain Anterior Caudate brain
32 chr4:54268800-54280800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr4:54268800-54292400 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr4:54269000-54276200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr4:54269200-54281400 Weak transcription HepG2 liver
36 chr4:54269200-54293400 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr4:54269400-54279400 Weak transcription Brain Inferior Temporal Lobe brain
38 chr4:54269400-54294800 Weak transcription Muscle Satellite Cultured Cells --
39 chr4:54269400-54303000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr4:54269600-54295000 Weak transcription HMEC breast
41 chr4:54270000-54275400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr4:54270000-54275600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr4:54270000-54275600 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr4:54270000-54276000 Weak transcription Adipose Nuclei Adipose
45 chr4:54270000-54276400 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr4:54270000-54276400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr4:54270000-54279200 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr4:54270000-54279400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr4:54270000-54280800 Weak transcription Primary T regulatory cells fromperipheralblood blood
50 chr4:54270000-54280800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015