Variant report

Variant	rs28588270
Chromosome Location	chr4:54312069-54312070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54309949..54312733-chr4:54313192..54317009,3	K562	blood:
2	chr4:54230700..54232277-chr4:54310392..54312931,2	K562	blood:
3	chr4:54229357..54232277-chr4:54310392..54313352,3	K562	blood:

Variant related genes	Relation type
ENSG00000184178	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10006090	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10011631	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10012682	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10012857	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10014172	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10019914	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10021659	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10022429	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10022604	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10023613	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10024153	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10024702	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10025091	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027090	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034035	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10517295	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12642401	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12644212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645252	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645287	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649258	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12649335	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12651687	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13435297	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13435378	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1383982	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1473911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481816	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs15834	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082681	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082726	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082741	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082744	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17082811	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082837	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17326196	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17839071	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054589	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054590	0.89[ASN][1000 genomes]
rs2054591	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2137894	0.85[ASN][1000 genomes]
rs2137895	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175906	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412487	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396593	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28403386	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28414224	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416355	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28417191	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28418269	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28454103	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28459811	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28460231	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28506190	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28538880	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28555544	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575132	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28633646	0.88[ASN][1000 genomes]
rs28647402	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28654213	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28658460	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28729231	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778298	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28835433	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28848852	0.95[ASN][1000 genomes]
rs34060994	0.89[ASN][1000 genomes]
rs3762877	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3762878	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3762879	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55862905	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56331163	0.80[ASN][1000 genomes]
rs56345181	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56997859	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57090564	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57165925	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57587034	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57616867	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57717970	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58566208	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59213600	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59311047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60072918	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62323221	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62323222	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62323223	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62325171	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325218	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62325968	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62325970	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6816889	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73154934	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73154945	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73156086	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312640	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9968395	0.89[ASN][1000 genomes]
rs9995110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9996299	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997905	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
2	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
3	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
4	chr4:54256600-54319200	Weak transcription	Gastric	stomach
5	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:54268400-54319800	Weak transcription	A549	lung
7	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
8	chr4:54270200-54316600	Weak transcription	Esophagus	oesophagus
9	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:54276600-54319000	Weak transcription	Lung	lung
12	chr4:54276800-54316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:54286200-54316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:54291400-54313200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:54291800-54315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr4:54292000-54314400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
21	chr4:54294400-54320600	Weak transcription	HSMMtube	muscle
22	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
23	chr4:54295400-54316600	Weak transcription	Ovary	ovary
24	chr4:54295600-54316600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:54295600-54319800	Weak transcription	Brain Anterior Caudate	brain
26	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
27	chr4:54296800-54320400	Weak transcription	Brain Germinal Matrix	brain
28	chr4:54297400-54312600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:54297400-54312800	Strong transcription	Primary T cells from cord blood	blood
30	chr4:54297400-54319200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:54297400-54319200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:54297400-54319200	Weak transcription	NH-A	brain
33	chr4:54297600-54326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:54297600-54329600	Strong transcription	Dnd41	blood
35	chr4:54298600-54329600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr4:54301800-54313800	Strong transcription	Liver	Liver
37	chr4:54302800-54320600	Weak transcription	Psoas Muscle	Psoas
38	chr4:54304000-54314000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr4:54304000-54315000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:54304200-54314600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:54304200-54315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:54305000-54324600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:54305800-54314000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:54305800-54315000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:54306000-54315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:54306200-54312600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr4:54306200-54312800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr4:54306200-54312800	Strong transcription	K562	blood
49	chr4:54306200-54313800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr4:54306200-54314000	Strong transcription	HUES48 Cell Line	embryonic stem cell

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