Variant report

Variant	rs57587034
Chromosome Location	chr4:54341969-54341970
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54340192..54342016-chr4:54343724..54345508,2	K562	blood:
2	chr4:54341936..54344019-chr4:54348085..54349647,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10006090	0.83[AMR][1000 genomes]
rs10008334	0.82[AFR][1000 genomes]
rs10011631	0.83[AMR][1000 genomes]
rs10012682	0.83[AMR][1000 genomes]
rs10012857	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10014172	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10019914	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10021659	0.83[AMR][1000 genomes]
rs10022429	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10022604	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10023613	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10024153	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10024702	0.83[AMR][1000 genomes]
rs10025091	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10027090	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10028131	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10034035	0.83[AMR][1000 genomes]
rs10517295	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12644212	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12645252	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12645287	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12649258	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12649335	0.83[AMR][1000 genomes]
rs12651687	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13435297	0.84[ASN][1000 genomes]
rs13435378	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1383982	0.83[AMR][1000 genomes]
rs1473911	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs15834	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17082681	0.84[ASN][1000 genomes]
rs17082726	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17082741	0.84[ASN][1000 genomes]
rs17082744	0.83[ASN][1000 genomes]
rs17082811	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17082837	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17082847	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17326196	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17839071	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2054589	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2054591	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2137895	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2175906	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2412487	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28396593	0.83[AMR][1000 genomes]
rs28403386	0.84[ASN][1000 genomes]
rs28414224	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28416355	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28417191	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28418269	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28454103	0.83[AMR][1000 genomes]
rs28459811	0.83[AMR][1000 genomes]
rs28460231	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28506190	0.84[ASN][1000 genomes]
rs28538880	0.84[ASN][1000 genomes]
rs28555544	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28575132	0.83[AMR][1000 genomes]
rs28588270	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28647402	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28654213	0.84[ASN][1000 genomes]
rs28658460	0.83[AMR][1000 genomes]
rs28729231	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28778298	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28778963	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28835433	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28848852	0.84[ASN][1000 genomes]
rs34060994	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3762877	0.83[AMR][1000 genomes]
rs3762878	0.83[AMR][1000 genomes]
rs3762879	0.83[AMR][1000 genomes]
rs55862905	0.84[ASN][1000 genomes]
rs56331163	0.85[ASN][1000 genomes]
rs56345181	0.84[ASN][1000 genomes]
rs56997859	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57090564	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57165925	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57616867	0.83[AMR][1000 genomes]
rs57717970	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58566208	0.83[AMR][1000 genomes]
rs59213600	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59311047	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60072918	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62323221	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62323222	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62323223	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62325171	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62325218	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62325970	0.83[AMR][1000 genomes]
rs6816889	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6835629	0.82[AFR][1000 genomes]
rs73154945	0.83[AMR][1000 genomes]
rs73156086	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9312640	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9968395	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9995110	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996049	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9996299	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9997905	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54342000	Weak transcription	Pancreas	Pancrea
2	chr4:54320000-54353200	Weak transcription	Gastric	stomach
3	chr4:54327600-54347800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
7	chr4:54329600-54342000	Weak transcription	NH-A	brain
8	chr4:54329600-54351000	Weak transcription	Adipose Nuclei	Adipose
9	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
10	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
11	chr4:54332000-54342400	Weak transcription	HSMM	muscle
12	chr4:54333000-54342800	Weak transcription	Esophagus	oesophagus
13	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
14	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:54333600-54342600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:54333600-54342800	Weak transcription	Fetal Stomach	stomach
17	chr4:54336400-54342800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:54338400-54347400	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:54339200-54343400	Strong transcription	Liver	Liver
20	chr4:54339400-54342400	Strong transcription	Placenta	Placenta
21	chr4:54339400-54343200	Strong transcription	Fetal Intestine Large	intestine
22	chr4:54339800-54342800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:54340200-54343200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr4:54340400-54343400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:54340600-54342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:54340600-54343200	Strong transcription	Fetal Intestine Small	intestine
27	chr4:54340800-54342000	Weak transcription	Fetal Brain Female	brain
28	chr4:54341200-54342800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr4:54341400-54342600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr4:54341400-54343000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:54341400-54347800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:54341600-54342200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr4:54341600-54342600	Enhancers	NHLF	lung
34	chr4:54341600-54342800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr4:54341600-54343000	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr4:54341600-54343000	Enhancers	NHDF-Ad	bronchial
37	chr4:54341800-54342400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:54341800-54342400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:54341800-54342600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr4:54341800-54342600	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr4:54341800-54342600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:54341800-54342600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:54341800-54342600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr4:54341800-54342600	Enhancers	Osteobl	bone
45	chr4:54341800-54342800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr4:54341800-54343000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:54341800-54343000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:54341800-54343000	Enhancers	HMEC	breast
49	chr4:54341800-54343800	Enhancers	HSMMtube	muscle
50	chr4:54341800-54345800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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