Variant report

Variant	rs9968395
Chromosome Location	chr4:54300522-54300523
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54231412..54233222-chr4:54299033..54301946,2	K562	blood:

Variant related genes	Relation type
ENSG00000184178	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10019914	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10022429	0.84[ASN][1000 genomes]
rs10022604	0.84[ASN][1000 genomes]
rs10023613	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10025091	0.84[ASN][1000 genomes]
rs10027090	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10028131	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12644212	0.89[ASN][1000 genomes]
rs12645252	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12645287	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13435297	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13435378	0.84[ASN][1000 genomes]
rs1473911	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs15834	0.89[ASN][1000 genomes]
rs17082681	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17082726	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17082741	0.84[ASN][1000 genomes]
rs17082744	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17082811	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17082837	0.89[ASN][1000 genomes]
rs17082847	0.87[ASN][1000 genomes]
rs17326196	0.89[ASN][1000 genomes]
rs17839071	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2137895	0.89[ASN][1000 genomes]
rs2175906	0.89[ASN][1000 genomes]
rs2412487	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28403386	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28414224	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28418269	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28460231	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28506190	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28538880	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28555544	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28588270	0.89[ASN][1000 genomes]
rs28647402	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28654213	0.84[ASN][1000 genomes]
rs28729231	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28778298	0.84[ASN][1000 genomes]
rs28778963	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28835433	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28848852	0.84[ASN][1000 genomes]
rs34060994	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55862905	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56345181	0.84[ASN][1000 genomes]
rs57090564	0.84[ASN][1000 genomes]
rs57165925	0.84[ASN][1000 genomes]
rs57587034	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57717970	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59213600	0.83[ASN][1000 genomes]
rs59311047	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62325171	0.82[ASN][1000 genomes]
rs62325218	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6816889	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73156086	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9995110	0.89[ASN][1000 genomes]
rs9996049	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9996299	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9997905	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
2	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
3	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
4	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
5	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
6	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
7	chr4:54256600-54319200	Weak transcription	Gastric	stomach
8	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
9	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:54268400-54319800	Weak transcription	A549	lung
12	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
14	chr4:54270200-54316600	Weak transcription	Esophagus	oesophagus
15	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:54276600-54302200	Weak transcription	Fetal Brain Female	brain
17	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:54276600-54319000	Weak transcription	Lung	lung
19	chr4:54276800-54310600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:54276800-54316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:54286200-54303000	Weak transcription	Fetal Stomach	stomach
23	chr4:54286200-54310800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:54286200-54316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:54287800-54310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:54288200-54307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:54288200-54310800	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:54291000-54310600	Weak transcription	Right Ventricle	heart
29	chr4:54291400-54302800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:54291400-54313200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:54291800-54302000	Strong transcription	NHDF-Ad	bronchial
32	chr4:54291800-54315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr4:54292000-54302200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:54292000-54314400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr4:54292400-54304800	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr4:54293000-54305000	Strong transcription	Adipose Nuclei	Adipose
39	chr4:54293200-54302000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:54293200-54302800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:54293200-54303200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
43	chr4:54294400-54309200	Weak transcription	NHEK	skin
44	chr4:54294400-54320600	Weak transcription	HSMMtube	muscle
45	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
46	chr4:54295400-54316600	Weak transcription	Ovary	ovary
47	chr4:54295600-54301000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr4:54295600-54310400	Weak transcription	Brain Angular Gyrus	brain
49	chr4:54295600-54311400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:54295600-54316600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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