Variant report

Variant	rs13435378
Chromosome Location	chr4:54287756-54287757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:54287332-54287892	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54280667..54284100-chr4:54286381..54289791,4	K562	blood:
2	chr4:54282216..54284006-chr4:54285486..54288770,3	K562	blood:

Variant related genes	Relation type
FIP1L1	TF binding region

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10006090	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10008334	0.88[YRI][hapmap]
rs10011631	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10012682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10012857	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10014172	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10019914	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021659	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10022429	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022604	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023613	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024153	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10024702	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10025091	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027090	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028131	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10034035	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10517295	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642401	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12644212	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12645252	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645287	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645694	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs12649258	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649335	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651687	0.84[ASN][1000 genomes]
rs13435297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383982	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473911	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1481816	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs15834	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082681	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082726	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17082811	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082837	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082847	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17326196	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17839071	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048709	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2054589	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054590	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2054591	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2137895	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2175906	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2412487	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28396593	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28403386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414224	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28416355	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28417191	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28418269	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454103	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28459811	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28460231	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28506190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555544	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575132	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28588270	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28633646	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28647402	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28654213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28658460	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28729231	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28778298	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28778963	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28835433	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28848852	1.00[ASN][1000 genomes]
rs34060994	0.84[ASN][1000 genomes]
rs3762877	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762878	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762879	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4864773	1.00[CEU][hapmap]
rs55862905	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345181	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56997859	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57090564	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57165925	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57587034	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs57616867	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57717970	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58566208	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59213600	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59311047	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60072918	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62323221	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62323222	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62323223	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325171	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62325218	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325968	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62325970	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6816889	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834099	0.81[YRI][hapmap]
rs6835629	0.84[YRI][hapmap]
rs73154934	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73154945	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73156086	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7680607	1.00[CEU][hapmap]
rs9312640	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968395	0.84[ASN][1000 genomes]
rs9995110	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9996049	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9996299	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997905	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
2	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
3	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
4	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
5	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
6	chr4:54253600-54293400	Weak transcription	HSMMtube	muscle
7	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
9	chr4:54256600-54319200	Weak transcription	Gastric	stomach
10	chr4:54257600-54296000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:54263800-54295000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:54264400-54294800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:54266400-54293600	Weak transcription	NHEK	skin
14	chr4:54267200-54294600	Weak transcription	Hela-S3	cervix
15	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
16	chr4:54268000-54295000	Weak transcription	Fetal Brain Male	brain
17	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:54268400-54319800	Weak transcription	A549	lung
20	chr4:54268800-54292400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:54269200-54293400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:54269400-54294800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:54269600-54295000	Weak transcription	HMEC	breast
25	chr4:54270000-54292400	Weak transcription	Placenta	Placenta
26	chr4:54270000-54293400	Weak transcription	NH-A	brain
27	chr4:54270000-54294000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
29	chr4:54270200-54293400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:54270200-54293400	Weak transcription	NHLF	lung
31	chr4:54270200-54295200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr4:54270200-54295400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:54270200-54316600	Weak transcription	Esophagus	oesophagus
34	chr4:54276400-54293400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:54276600-54290800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:54276600-54293000	Weak transcription	Adipose Nuclei	Adipose
38	chr4:54276600-54293200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:54276600-54293200	Weak transcription	Fetal Kidney	kidney
40	chr4:54276600-54293400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:54276600-54293600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:54276600-54294200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr4:54276600-54295000	Weak transcription	Thymus	Thymus
44	chr4:54276600-54295200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:54276600-54297000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr4:54276600-54302200	Weak transcription	Fetal Brain Female	brain
47	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:54276600-54319000	Weak transcription	Lung	lung
49	chr4:54276800-54293400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr4:54276800-54310600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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