Variant report

Variant	rs12642401
Chromosome Location	chr4:54233638-54233639
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54231262..54233846-chr4:54243717..54245288,2	MCF-7	breast:
2	chr4:54230756..54233682-chr4:54240977..54245711,5	MCF-7	breast:
3	chr4:54233149..54235683-chr4:54236271..54238377,2	MCF-7	breast:
4	chr4:53585131..53587206-chr4:54232522..54234735,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248375	Chromatin interaction
ENSG00000145216	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10005221	0.87[EUR][1000 genomes]
rs10006090	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10011631	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10012682	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10012857	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10014172	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10019914	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10021659	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10022429	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10022604	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10023613	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10024153	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10024702	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10025091	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10027090	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10028131	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10034035	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10517295	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12644212	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12645252	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12645287	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12649258	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12649335	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13435297	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13435378	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1383982	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1473911	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1481816	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs15834	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17082681	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17082726	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17082741	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17082744	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17082811	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17082837	0.87[ASN][1000 genomes]
rs17082847	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17326196	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17839071	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2054589	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2054590	0.97[ASN][1000 genomes]
rs2054591	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2137895	0.87[ASN][1000 genomes]
rs2175906	0.87[ASN][1000 genomes]
rs2412487	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28396593	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28403386	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28414224	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28416355	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28417191	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28418269	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28454103	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28459811	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28460231	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28506190	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28538880	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28555544	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28575132	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28588270	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28633646	0.86[ASN][1000 genomes]
rs28647402	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28654213	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28658460	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28729231	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28778298	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28778963	0.80[AMR][1000 genomes]
rs28831138	0.84[AMR][1000 genomes]
rs28835433	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28848852	0.92[ASN][1000 genomes]
rs3762877	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3762878	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3762879	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55862905	0.92[ASN][1000 genomes]
rs56345181	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56997859	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57090564	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57165925	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57616867	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57717970	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58566208	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59213600	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59311047	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60072918	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62323221	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62323222	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62323223	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62325171	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62325218	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62325968	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325970	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6816889	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73154934	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73154945	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73156086	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9312640	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9995110	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9996049	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9996299	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9997905	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54233000-54234000	Weak transcription	NHDF-Ad	bronchial
2	chr4:54233000-54234200	Enhancers	Fetal Thymus	thymus
3	chr4:54233000-54238600	Weak transcription	Aorta	Aorta
4	chr4:54233000-54243200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:54233200-54234000	Enhancers	Thymus	Thymus
6	chr4:54233200-54235400	Weak transcription	K562	blood
7	chr4:54233400-54234000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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