The 2.0 version of rSNPBase

Variant report

Variant rs28831138
Chromosome Location chr4:54220040-54220041
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54170600-54230600 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr4:54188200-54231200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr4:54202200-54226000 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr4:54206600-54220200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr4:54210400-54225600 Weak transcription Small Intestine intestine
6 chr4:54211600-54220200 Weak transcription Fetal Stomach stomach
7 chr4:54212000-54220600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr4:54212000-54227200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr4:54212200-54220800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr4:54213200-54220200 Strong transcription Primary monocytes fromperipheralblood blood
11 chr4:54213600-54228600 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr4:54213800-54230400 Weak transcription Fetal Kidney kidney
13 chr4:54214000-54221800 Weak transcription Ovary ovary
14 chr4:54214000-54230800 Weak transcription Aorta Aorta
15 chr4:54214000-54231200 Weak transcription Lung lung
16 chr4:54214200-54220200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr4:54214200-54221800 Weak transcription Pancreas Pancrea
18 chr4:54214200-54221800 Weak transcription Psoas Muscle Psoas
19 chr4:54214200-54224000 Weak transcription Muscle Satellite Cultured Cells --
20 chr4:54214200-54228200 Weak transcription Esophagus oesophagus
21 chr4:54214200-54228200 Weak transcription Fetal Brain Female brain
22 chr4:54214200-54228200 Weak transcription NH-A brain
23 chr4:54214200-54228800 Weak transcription Colon Smooth Muscle Colon
24 chr4:54214200-54229000 Weak transcription HUVEC blood vessel
25 chr4:54214200-54230000 Weak transcription Fetal Heart heart
26 chr4:54214200-54230000 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr4:54214200-54230400 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr4:54214200-54230800 Weak transcription Brain Angular Gyrus brain
29 chr4:54214200-54230800 Weak transcription Brain Substantia Nigra brain
30 chr4:54214200-54230800 Weak transcription Fetal Lung lung
31 chr4:54214200-54230800 Weak transcription Right Ventricle heart
32 chr4:54214200-54230800 Weak transcription HSMMtube muscle
33 chr4:54214200-54231000 Weak transcription Brain Cingulate Gyrus brain
34 chr4:54214200-54231000 Weak transcription Rectal Smooth Muscle rectum
35 chr4:54214200-54231200 Weak transcription Spleen Spleen
36 chr4:54214400-54224400 Weak transcription A549 lung
37 chr4:54214400-54230200 Weak transcription HMEC breast
38 chr4:54214600-54230000 Weak transcription Brain Anterior Caudate brain
39 chr4:54214800-54220200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr4:54214800-54230200 Weak transcription Placenta Amnion Placenta Amnion
41 chr4:54215000-54226800 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr4:54215400-54220200 Strong transcription Primary T cells from cord blood blood
43 chr4:54215800-54220200 Strong transcription Primary B cells from peripheral blood blood
44 chr4:54215800-54221200 Weak transcription K562 blood
45 chr4:54216000-54221000 Weak transcription HepG2 liver
46 chr4:54216000-54221200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr4:54216200-54220200 Weak transcription Fetal Intestine Large intestine
48 chr4:54216600-54227600 Weak transcription Primary T regulatory cells fromperipheralblood blood
49 chr4:54217400-54220200 Weak transcription Fetal Thymus thymus
50 chr4:54218200-54220800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015