Variant report

Variant	rs10012857
Chromosome Location	chr4:54250207-54250208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54248839..54251059-chr4:54253637..54255570,3	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10006090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011631	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012682	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10014172	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019914	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021659	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022429	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10022604	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023613	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10024153	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024702	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025091	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027090	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028131	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10034035	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10517295	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642401	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12644212	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12645252	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645287	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645694	1.00[CEU][hapmap]
rs12649258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649335	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651687	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13435297	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13435378	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1383982	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473911	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1481816	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs15834	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17082681	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082726	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082741	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082744	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17082811	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082837	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17082847	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17326196	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17839071	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2048709	1.00[CEU][hapmap]
rs2054589	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054590	1.00[ASN][1000 genomes]
rs2054591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137895	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2175906	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2412487	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28396593	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28403386	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28414224	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416355	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28454103	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28459811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28506190	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28538880	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28555544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575132	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588270	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28633646	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28647402	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28654213	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28658460	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729231	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778963	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28831138	0.80[AMR][1000 genomes]
rs28835433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28848852	0.95[ASN][1000 genomes]
rs3762877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762879	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864773	1.00[CEU][hapmap]
rs55862905	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56345181	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56997859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57090564	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57165925	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57587034	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57616867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57717970	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58566208	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59213600	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59311047	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60072918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62323221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325171	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325968	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62325970	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816889	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73154934	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73154945	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156086	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7680607	1.00[CEU][hapmap]
rs9312640	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995110	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996049	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9996299	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997905	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54256000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:54244600-54256000	Weak transcription	Esophagus	oesophagus
3	chr4:54244600-54256000	Weak transcription	Gastric	stomach
4	chr4:54244600-54256000	Weak transcription	Lung	lung
5	chr4:54244600-54256200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
8	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
9	chr4:54244800-54256000	Weak transcription	Stomach Mucosa	stomach
10	chr4:54245000-54252800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:54245000-54271400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:54245200-54252800	Weak transcription	HSMMtube	muscle
13	chr4:54245400-54251800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:54245400-54253000	Weak transcription	Colonic Mucosa	Colon
15	chr4:54245400-54253000	Weak transcription	Psoas Muscle	Psoas
16	chr4:54245400-54256000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
18	chr4:54245600-54252800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:54245600-54269600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:54245600-54270200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:54246000-54257800	Weak transcription	Fetal Heart	heart
22	chr4:54246000-54270200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:54246000-54270200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:54246200-54250600	Weak transcription	Brain Substantia Nigra	brain
25	chr4:54246200-54251600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:54246200-54252800	Weak transcription	Fetal Brain Female	brain
27	chr4:54246200-54252800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:54246200-54256000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:54246200-54256000	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:54246200-54276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
32	chr4:54246400-54250800	Weak transcription	Fetal Brain Male	brain
33	chr4:54246400-54251800	Weak transcription	Brain Anterior Caudate	brain
34	chr4:54246400-54255600	Weak transcription	Ovary	ovary
35	chr4:54246400-54259800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:54246400-54259800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr4:54246600-54250600	Weak transcription	NHEK	skin
38	chr4:54246600-54252600	Weak transcription	NHLF	lung
39	chr4:54246600-54253400	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:54246600-54255800	Weak transcription	Brain Germinal Matrix	brain
41	chr4:54246600-54259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:54246600-54270200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
44	chr4:54246800-54250600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:54246800-54250800	Weak transcription	Primary B cells from cord blood	blood
46	chr4:54246800-54252600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr4:54246800-54252600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr4:54246800-54252600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr4:54247000-54256000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr4:54247200-54258600	Strong transcription	Fetal Intestine Large	intestine

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