Variant report

Variant	rs28778298
Chromosome Location	chr4:54270631-54270632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10006090	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10011631	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10012682	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10012857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10014172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10019914	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021659	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10022429	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022604	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023613	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024153	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10024702	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10025091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028131	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10034035	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10517295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642401	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12644212	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12645252	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645287	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649335	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651687	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13435297	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435378	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383982	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473911	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1481816	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs15834	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082681	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082726	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082741	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082744	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17082811	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082837	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082847	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17326196	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17839071	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054590	0.95[ASN][1000 genomes]
rs2054591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2137895	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2175906	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2412487	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28396593	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28403386	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414224	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28416355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28417191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28418269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454103	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28459811	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28460231	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28506190	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538880	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575132	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28588270	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28633646	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28647402	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28654213	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28658460	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28729231	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28778963	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28831138	0.80[AMR][1000 genomes]
rs28835433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28848852	1.00[ASN][1000 genomes]
rs34060994	0.84[ASN][1000 genomes]
rs3762877	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762878	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762879	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55862905	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345181	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56997859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57090564	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57165925	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57587034	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57616867	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57717970	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58566208	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59213600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59311047	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60072918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62323221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62323222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62323223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325171	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62325218	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325968	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62325970	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6816889	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154934	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73154945	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73156086	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9312640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968395	0.84[ASN][1000 genomes]
rs9995110	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9996049	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9996299	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
3	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
4	chr4:54245000-54271400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
6	chr4:54246200-54276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
8	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
9	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
10	chr4:54253600-54293400	Weak transcription	HSMMtube	muscle
11	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
13	chr4:54256600-54319200	Weak transcription	Gastric	stomach
14	chr4:54256800-54271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:54256800-54275400	Weak transcription	Lung	lung
16	chr4:54256800-54275600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:54256800-54279000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:54257600-54296000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:54259400-54272000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:54263800-54295000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:54264000-54279600	Weak transcription	Fetal Heart	heart
22	chr4:54264400-54294800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:54266400-54293600	Weak transcription	NHEK	skin
24	chr4:54266600-54279400	Weak transcription	Brain Angular Gyrus	brain
25	chr4:54266800-54275600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:54267200-54294600	Weak transcription	Hela-S3	cervix
27	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
28	chr4:54268000-54295000	Weak transcription	Fetal Brain Male	brain
29	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
31	chr4:54268200-54276200	Weak transcription	Fetal Kidney	kidney
32	chr4:54268200-54280800	Weak transcription	HUVEC	blood vessel
33	chr4:54268400-54271600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:54268400-54280600	Weak transcription	HSMM	muscle
35	chr4:54268400-54319800	Weak transcription	A549	lung
36	chr4:54268600-54287400	Weak transcription	Brain Anterior Caudate	brain
37	chr4:54268800-54280800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:54268800-54292400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:54269000-54276200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:54269200-54281400	Weak transcription	HepG2	liver
41	chr4:54269200-54293400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:54269400-54279400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr4:54269400-54294800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:54269600-54295000	Weak transcription	HMEC	breast
46	chr4:54270000-54271400	Weak transcription	Fetal Brain Female	brain
47	chr4:54270000-54275400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:54270000-54275600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:54270000-54275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:54270000-54276000	Weak transcription	Adipose Nuclei	Adipose

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