The 2.0 version of rSNPBase

Variant report

Variant rs28396593
Chromosome Location chr4:54223351-54223352
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54170600-54230600 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr4:54188200-54231200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr4:54202200-54226000 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr4:54210400-54225600 Weak transcription Small Intestine intestine
5 chr4:54212000-54227200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr4:54213600-54228600 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr4:54213800-54230400 Weak transcription Fetal Kidney kidney
8 chr4:54214000-54230800 Weak transcription Aorta Aorta
9 chr4:54214000-54231200 Weak transcription Lung lung
10 chr4:54214200-54224000 Weak transcription Muscle Satellite Cultured Cells --
11 chr4:54214200-54228200 Weak transcription Esophagus oesophagus
12 chr4:54214200-54228200 Weak transcription Fetal Brain Female brain
13 chr4:54214200-54228200 Weak transcription NH-A brain
14 chr4:54214200-54228800 Weak transcription Colon Smooth Muscle Colon
15 chr4:54214200-54229000 Weak transcription HUVEC blood vessel
16 chr4:54214200-54230000 Weak transcription Fetal Heart heart
17 chr4:54214200-54230000 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr4:54214200-54230400 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr4:54214200-54230800 Weak transcription Brain Angular Gyrus brain
20 chr4:54214200-54230800 Weak transcription Brain Substantia Nigra brain
21 chr4:54214200-54230800 Weak transcription Fetal Lung lung
22 chr4:54214200-54230800 Weak transcription Right Ventricle heart
23 chr4:54214200-54230800 Weak transcription HSMMtube muscle
24 chr4:54214200-54231000 Weak transcription Brain Cingulate Gyrus brain
25 chr4:54214200-54231000 Weak transcription Rectal Smooth Muscle rectum
26 chr4:54214200-54231200 Weak transcription Spleen Spleen
27 chr4:54214400-54224400 Weak transcription A549 lung
28 chr4:54214400-54230200 Weak transcription HMEC breast
29 chr4:54214600-54230000 Weak transcription Brain Anterior Caudate brain
30 chr4:54214800-54230200 Weak transcription Placenta Amnion Placenta Amnion
31 chr4:54215000-54226800 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr4:54216600-54227600 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr4:54218800-54230800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr4:54219000-54224800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr4:54219000-54225800 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr4:54219000-54227600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr4:54219000-54228400 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr4:54219200-54224800 Weak transcription Osteobl bone
39 chr4:54219200-54225800 Weak transcription Dnd41 blood
40 chr4:54219200-54227400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr4:54219200-54227600 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr4:54219200-54227600 Weak transcription Primary T cells fromperipheralblood blood
43 chr4:54219200-54227600 Weak transcription HSMM muscle
44 chr4:54219200-54229400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
45 chr4:54219200-54229400 Weak transcription Fetal Muscle Trunk muscle
46 chr4:54219200-54230000 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr4:54219400-54229400 Weak transcription Left Ventricle heart
48 chr4:54219400-54230400 Weak transcription Brain Inferior Temporal Lobe brain
49 chr4:54219400-54230800 Weak transcription Thymus Thymus
50 chr4:54219600-54226200 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015