Variant report

Variant	rs10006090
Chromosome Location	chr4:54247141-54247142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10011631	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012682	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014172	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019914	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022429	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10022604	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023613	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10024153	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024702	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025091	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027090	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028131	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10034035	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10517295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642401	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644212	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12645252	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645287	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649335	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651687	0.83[AMR][1000 genomes]
rs13435297	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13435378	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1383982	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473911	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1481816	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs15834	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082681	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082726	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082741	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082744	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17082811	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082837	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082847	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17326196	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17839071	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2054589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054590	1.00[ASN][1000 genomes]
rs2054591	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137895	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2175906	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2412487	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28396593	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28403386	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28414224	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417191	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28454103	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28459811	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460231	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28506190	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28538880	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28555544	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588270	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28633646	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28647402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28654213	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28658460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729231	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28778298	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778963	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28831138	0.80[AMR][1000 genomes]
rs28835433	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28848852	0.95[ASN][1000 genomes]
rs3762877	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762879	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55862905	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56345181	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56997859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57090564	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57165925	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57587034	0.83[AMR][1000 genomes]
rs57616867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57717970	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58566208	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59213600	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59311047	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60072918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62323221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325171	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325218	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325968	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62325970	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816889	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73154934	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73154945	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156086	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9312640	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995110	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9996049	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9996299	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997905	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54243000-54247800	Active TSS	GM12878-XiMat	blood
2	chr4:54244600-54250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:54244600-54250200	Weak transcription	Left Ventricle	heart
4	chr4:54244600-54256000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:54244600-54256000	Weak transcription	Esophagus	oesophagus
6	chr4:54244600-54256000	Weak transcription	Gastric	stomach
7	chr4:54244600-54256000	Weak transcription	Lung	lung
8	chr4:54244600-54256200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
11	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
12	chr4:54244800-54250200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:54244800-54256000	Weak transcription	Stomach Mucosa	stomach
14	chr4:54245000-54248400	Weak transcription	Placenta	Placenta
15	chr4:54245000-54248400	Weak transcription	HSMM	muscle
16	chr4:54245000-54248800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:54245000-54249800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:54245000-54252800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:54245000-54271400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:54245200-54247800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr4:54245200-54248400	Weak transcription	Adipose Nuclei	Adipose
22	chr4:54245200-54248400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:54245200-54249400	Weak transcription	Fetal Intestine Small	intestine
24	chr4:54245200-54250200	Weak transcription	Fetal Stomach	stomach
25	chr4:54245200-54252800	Weak transcription	HSMMtube	muscle
26	chr4:54245400-54248000	Weak transcription	Fetal Muscle Leg	muscle
27	chr4:54245400-54248400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:54245400-54248400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:54245400-54248400	Weak transcription	Fetal Thymus	thymus
30	chr4:54245400-54248600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:54245400-54249600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:54245400-54251800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr4:54245400-54253000	Weak transcription	Colonic Mucosa	Colon
34	chr4:54245400-54253000	Weak transcription	Psoas Muscle	Psoas
35	chr4:54245400-54256000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
37	chr4:54245600-54248600	Weak transcription	A549	lung
38	chr4:54245600-54252800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:54245600-54269600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:54245600-54270200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr4:54245800-54247400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:54245800-54247600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:54245800-54247600	Enhancers	HepG2	liver
44	chr4:54245800-54247800	Enhancers	Primary T cells from cord blood	blood
45	chr4:54245800-54247800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr4:54245800-54248400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:54245800-54248400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr4:54245800-54248400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:54245800-54249400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr4:54246000-54247400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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