Variant report

Variant	rs62325970
Chromosome Location	chr4:54228478-54228479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54220179..54222765-chr4:54228443..54230623,2	K562	blood:
2	chr4:54226723..54229177-chr4:54230670..54233407,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184178	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10005221	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10006090	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011631	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012857	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014172	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019914	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10021659	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022429	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10022604	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10023613	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10024153	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025091	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027090	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028131	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10034035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10517295	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642401	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644212	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12645252	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645287	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649258	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649335	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13435297	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13435378	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1383982	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473911	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1481816	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs15834	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082681	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082726	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082741	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17082744	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17082811	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17082837	0.89[ASN][1000 genomes]
rs17082847	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17326196	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17839071	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2054589	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054590	1.00[ASN][1000 genomes]
rs2054591	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137895	0.89[ASN][1000 genomes]
rs2175906	0.89[ASN][1000 genomes]
rs2412487	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28396593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28403386	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28414224	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28416355	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417191	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418269	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28454103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28459811	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28460231	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28506190	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28538880	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28555544	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575132	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28588270	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28633646	0.88[ASN][1000 genomes]
rs28647402	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28654213	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28658460	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28729231	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28778298	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778963	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28831138	0.88[AMR][1000 genomes]
rs28835433	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28848852	0.95[ASN][1000 genomes]
rs3762877	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3762878	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3762879	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55862905	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56345181	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56997859	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57090564	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57165925	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57587034	0.83[AMR][1000 genomes]
rs57616867	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57717970	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58566208	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59213600	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59311047	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60072918	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62323221	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323222	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323223	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325171	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325218	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62325968	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6816889	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73154934	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73154945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156086	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73816160	0.85[AFR][1000 genomes]
rs9312640	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995110	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9996049	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9996299	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997905	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:54213600-54228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:54213800-54230400	Weak transcription	Fetal Kidney	kidney
5	chr4:54214000-54230800	Weak transcription	Aorta	Aorta
6	chr4:54214000-54231200	Weak transcription	Lung	lung
7	chr4:54214200-54228800	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:54214200-54229000	Weak transcription	HUVEC	blood vessel
9	chr4:54214200-54230000	Weak transcription	Fetal Heart	heart
10	chr4:54214200-54230000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:54214200-54230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:54214200-54230800	Weak transcription	Brain Angular Gyrus	brain
13	chr4:54214200-54230800	Weak transcription	Brain Substantia Nigra	brain
14	chr4:54214200-54230800	Weak transcription	Fetal Lung	lung
15	chr4:54214200-54230800	Weak transcription	Right Ventricle	heart
16	chr4:54214200-54230800	Weak transcription	HSMMtube	muscle
17	chr4:54214200-54231000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:54214200-54231000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:54214200-54231200	Weak transcription	Spleen	Spleen
20	chr4:54214400-54230200	Weak transcription	HMEC	breast
21	chr4:54214600-54230000	Weak transcription	Brain Anterior Caudate	brain
22	chr4:54214800-54230200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:54218800-54230800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:54219200-54229400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:54219200-54229400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr4:54219200-54230000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:54219400-54229400	Weak transcription	Left Ventricle	heart
28	chr4:54219400-54230400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr4:54219400-54230800	Weak transcription	Thymus	Thymus
30	chr4:54219600-54228800	Weak transcription	Adipose Nuclei	Adipose
31	chr4:54219600-54229000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:54219600-54230000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr4:54219600-54230200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:54219800-54230400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:54220400-54230400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:54220400-54230800	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:54220600-54230800	Weak transcription	Fetal Thymus	thymus
38	chr4:54220800-54229200	Weak transcription	Fetal Stomach	stomach
39	chr4:54220800-54230400	Weak transcription	Fetal Intestine Large	intestine
40	chr4:54221200-54230800	Weak transcription	Fetal Intestine Small	intestine
41	chr4:54222400-54230800	Weak transcription	Psoas Muscle	Psoas
42	chr4:54224800-54233000	Active TSS	GM12878-XiMat	blood
43	chr4:54226200-54231200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr4:54226400-54230800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr4:54226800-54231200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr4:54227200-54228600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:54227200-54229200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:54227200-54229400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:54227200-54231000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr4:54227400-54229600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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