The 2.0 version of rSNPBase

Variant report

Variant rs73154945
Chromosome Location chr4:54229787-54229788
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54170600-54230600 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr4:54188200-54231200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr4:54213800-54230400 Weak transcription Fetal Kidney kidney
4 chr4:54214000-54230800 Weak transcription Aorta Aorta
5 chr4:54214000-54231200 Weak transcription Lung lung
6 chr4:54214200-54230000 Weak transcription Fetal Heart heart
7 chr4:54214200-54230000 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr4:54214200-54230400 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr4:54214200-54230800 Weak transcription Brain Angular Gyrus brain
10 chr4:54214200-54230800 Weak transcription Brain Substantia Nigra brain
11 chr4:54214200-54230800 Weak transcription Fetal Lung lung
12 chr4:54214200-54230800 Weak transcription Right Ventricle heart
13 chr4:54214200-54230800 Weak transcription HSMMtube muscle
14 chr4:54214200-54231000 Weak transcription Brain Cingulate Gyrus brain
15 chr4:54214200-54231000 Weak transcription Rectal Smooth Muscle rectum
16 chr4:54214200-54231200 Weak transcription Spleen Spleen
17 chr4:54214400-54230200 Weak transcription HMEC breast
18 chr4:54214600-54230000 Weak transcription Brain Anterior Caudate brain
19 chr4:54214800-54230200 Weak transcription Placenta Amnion Placenta Amnion
20 chr4:54218800-54230800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr4:54219200-54230000 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr4:54219400-54230400 Weak transcription Brain Inferior Temporal Lobe brain
23 chr4:54219400-54230800 Weak transcription Thymus Thymus
24 chr4:54219600-54230000 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr4:54219600-54230200 Weak transcription Primary hematopoietic stem cells blood
26 chr4:54219800-54230400 Weak transcription Stomach Smooth Muscle stomach
27 chr4:54220400-54230400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr4:54220400-54230800 Weak transcription Fetal Muscle Leg muscle
29 chr4:54220600-54230800 Weak transcription Fetal Thymus thymus
30 chr4:54220800-54230400 Weak transcription Fetal Intestine Large intestine
31 chr4:54221200-54230800 Weak transcription Fetal Intestine Small intestine
32 chr4:54222400-54230800 Weak transcription Psoas Muscle Psoas
33 chr4:54224800-54233000 Active TSS GM12878-XiMat blood
34 chr4:54226200-54231200 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr4:54226400-54230800 Enhancers Primary T helper cells fromperipheralblood blood
36 chr4:54226800-54231200 Enhancers Primary T killer naive cells fromperipheralblood blood
37 chr4:54227200-54231000 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr4:54227400-54230000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr4:54227400-54230000 Enhancers Primary T cells from cord blood blood
40 chr4:54227400-54230800 Weak transcription HUES48 Cell Line embryonic stem cell
41 chr4:54227600-54229800 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr4:54227600-54230000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr4:54227600-54230400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr4:54227600-54230800 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr4:54227800-54230800 Enhancers Hela-S3 cervix
46 chr4:54227800-54231000 Weak transcription ES-WA7 Cell Line embryonic stem cell
47 chr4:54227800-54232600 Active TSS NHLF lung
48 chr4:54228000-54230000 Enhancers Primary T killer memory cells from peripheral blood blood
49 chr4:54228000-54230800 Enhancers Primary B cells from cord blood blood
50 chr4:54228000-54231200 Enhancers Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015