Variant report

Variant	rs1481822
Chromosome Location	chr4:54153814-54153815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10014172	0.92[CHD][hapmap]
rs10021659	0.84[YRI][hapmap]
rs10022429	0.84[YRI][hapmap]
rs10024153	0.92[CHD][hapmap]
rs10025091	0.92[CHD][hapmap]
rs10517295	0.92[CHD][hapmap]
rs12644212	0.84[ASW][hapmap];0.92[CHD][hapmap];0.84[YRI][hapmap]
rs12645287	0.92[CHD][hapmap]
rs1481816	0.88[CHD][hapmap]
rs15834	0.83[YRI][hapmap]
rs17082492	1.00[ASW][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs17082557	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17326196	0.84[YRI][hapmap]
rs17839071	0.92[CHD][hapmap]
rs1962230	1.00[ASW][hapmap];0.88[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs2048709	0.92[CHD][hapmap]
rs2412487	0.92[CHD][hapmap]
rs28408605	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28524754	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28575132	0.92[CHD][hapmap]
rs28658460	0.92[CHD][hapmap]
rs28676739	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28704944	0.80[AFR][1000 genomes]
rs28826682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28829603	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28865315	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28874576	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4555709	1.00[YRI][hapmap]
rs55744909	0.80[AFR][1000 genomes]
rs58424801	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62324293	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6810475	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6811200	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6835821	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6852755	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73816160	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7680607	0.85[CHB][hapmap];0.80[AFR][1000 genomes]
rs9312637	1.00[YRI][hapmap]
rs9884671	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9992110	1.00[ASW][hapmap];0.81[GIH][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs9994573	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9995661	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9997095	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2763360	chr4:54123894-54153814	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54129600-54154600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:54134800-54154200	Weak transcription	NHLF	lung
3	chr4:54135200-54154600	Weak transcription	Primary T cells from cord blood	blood
4	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:54141000-54155800	Weak transcription	Pancreas	Pancrea
6	chr4:54152200-54154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:54153200-54164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:54153800-54156800	Weak transcription	Primary B cells from cord blood	blood

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