Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10005221	0.82[ASN][1000 genomes]
rs1481822	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17082557	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28408605	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28524754	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28676739	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28826682	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28829603	0.91[EUR][1000 genomes]
rs28865315	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28874576	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62324293	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6810475	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6811200	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6835821	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6852755	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73816160	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9884671	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9994573	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9995661	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9997095	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54153200-54164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:54161000-54172000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:54162400-54164200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:54163400-54164000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:54163400-54164600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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