Variant report

Variant rs28408605
Chromosome Location chr4:54188591-54188592
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54169800-54216200 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr4:54170600-54230600 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr4:54172600-54215400 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr4:54174200-54212600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr4:54180000-54193200 Weak transcription GM12878-XiMat blood
6 chr4:54180000-54212800 Weak transcription Primary B cells from cord blood blood
7 chr4:54187200-54189000 Enhancers Fetal Lung lung
8 chr4:54187400-54188600 Enhancers Primary T helper cells PMA-I stimulated --
9 chr4:54187400-54188600 Enhancers Cortex derived primary cultured neurospheres brain
10 chr4:54187400-54188800 Enhancers HUES48 Cell Line embryonic stem cell
11 chr4:54187600-54188600 Enhancers ES-I3 Cell Line embryonic stem cell
12 chr4:54187600-54188600 Enhancers Sigmoid Colon Sigmoid Colon
13 chr4:54187600-54189800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr4:54187800-54188600 Enhancers Primary T cells from cord blood blood
15 chr4:54187800-54188600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
16 chr4:54187800-54192200 Enhancers Liver Liver
17 chr4:54187800-54212800 Weak transcription Dnd41 blood
18 chr4:54188000-54188600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr4:54188000-54188600 Enhancers Gastric stomach
20 chr4:54188000-54188600 Enhancers Left Ventricle heart
21 chr4:54188000-54188600 Enhancers Pancreas Pancrea
22 chr4:54188000-54188600 Enhancers Small Intestine intestine
23 chr4:54188000-54189200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
24 chr4:54188000-54189200 Enhancers Stomach Mucosa stomach
25 chr4:54188000-54189400 Enhancers Duodenum Mucosa Duodenum
26 chr4:54188000-54189600 Enhancers HepG2 liver
27 chr4:54188000-54189800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr4:54188200-54188600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
29 chr4:54188200-54188600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr4:54188200-54188600 Weak transcription A549 lung
31 chr4:54188200-54189000 Weak transcription K562 blood
32 chr4:54188200-54189200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr4:54188200-54189200 Enhancers Muscle Satellite Cultured Cells --
34 chr4:54188200-54189200 Weak transcription Brain Angular Gyrus brain
35 chr4:54188200-54189200 Enhancers HSMMtube muscle
36 chr4:54188200-54189200 Enhancers NHLF lung
37 chr4:54188200-54189400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr4:54188200-54189400 Enhancers Hela-S3 cervix
39 chr4:54188200-54189400 Enhancers NH-A brain
40 chr4:54188200-54189600 Enhancers Osteobl bone
41 chr4:54188200-54190000 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr4:54188200-54190000 Enhancers HUVEC blood vessel
43 chr4:54188200-54195000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr4:54188200-54213800 Weak transcription Right Ventricle heart
45 chr4:54188200-54218200 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr4:54188200-54231200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr4:54188400-54188600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr4:54188400-54189800 Enhancers NHDF-Ad bronchial
49 chr4:54188400-54190600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr4:54188400-54190800 Weak transcription Spleen Spleen

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