Variant report

Variant	rs28865315
Chromosome Location	chr4:54111421-54111422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1481822	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17082557	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28408605	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28496991	0.82[ASN][1000 genomes]
rs28524754	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28676739	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28826682	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28829603	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28874576	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58424801	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62324293	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6810475	0.88[EUR][1000 genomes]
rs6811200	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6835821	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6852755	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73816160	0.88[EUR][1000 genomes]
rs9884671	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9995661	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9997095	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879013	chr4:54093717-54137228	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54100200-54111600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:54101600-54129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:54106600-54120000	Weak transcription	Gastric	stomach
4	chr4:54108000-54114000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:54108200-54114200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:54108400-54114200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:54108400-54114200	Weak transcription	Pancreas	Pancrea
8	chr4:54108400-54129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:54110800-54111800	ZNF genes & repeats	Primary B cells from cord blood	blood
10	chr4:54111200-54111600	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr4:54111400-54114400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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