Variant report

Variant	rs4871539
Chromosome Location	chr8:125773229-125773230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13279462	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35999233	0.84[AMR][1000 genomes]
rs4242366	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871534	0.81[CEU][hapmap];0.82[CHB][hapmap];0.97[EUR][1000 genomes]
rs4871540	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986404	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7013867	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7823383	0.97[EUR][1000 genomes]
rs7833381	0.97[EUR][1000 genomes]
rs7833511	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7841287	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125764800-125773600	Weak transcription	NHDF-Ad	bronchial
2	chr8:125765000-125773600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:125770800-125773600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:125770800-125773600	Weak transcription	Psoas Muscle	Psoas
5	chr8:125771000-125773400	Weak transcription	Primary B cells from cord blood	blood
6	chr8:125771000-125774200	Enhancers	Fetal Intestine Small	intestine
7	chr8:125771400-125773800	Enhancers	Fetal Intestine Large	intestine
8	chr8:125772600-125774200	Enhancers	Pancreas	Pancrea
9	chr8:125772600-125775400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:125773000-125773400	Weak transcription	HSMM	muscle
11	chr8:125773000-125773400	Weak transcription	HSMMtube	muscle
12	chr8:125773000-125773400	Weak transcription	Osteobl	bone
13	chr8:125773200-125775000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:125773200-125775000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:125773200-125778800	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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