Variant report

Variant	rs4871540
Chromosome Location	chr8:125773834-125773835
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10109504	0.81[CHB][hapmap]
rs13279462	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4242366	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4871534	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4871539	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986404	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7013867	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7823383	0.93[EUR][1000 genomes]
rs7833381	0.93[EUR][1000 genomes]
rs7833511	0.94[EUR][1000 genomes]
rs7841287	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125771000-125774200	Enhancers	Fetal Intestine Small	intestine
2	chr8:125772600-125774200	Enhancers	Pancreas	Pancrea
3	chr8:125772600-125775400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:125773200-125775000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:125773200-125775000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr8:125773200-125778800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:125773400-125774800	Enhancers	Osteobl	bone
8	chr8:125773400-125775000	Enhancers	Primary B cells from cord blood	blood
9	chr8:125773400-125775000	Enhancers	HSMMtube	muscle
10	chr8:125773400-125775200	Enhancers	HSMM	muscle
11	chr8:125773400-125775400	Enhancers	Primary B cells from peripheral blood	blood
12	chr8:125773600-125774200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:125773600-125774200	Enhancers	Psoas Muscle	Psoas
14	chr8:125773600-125775000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:125773600-125775200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:125773600-125775200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:125773600-125775200	Enhancers	NHDF-Ad	bronchial
18	chr8:125773800-125775000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:125773800-125778600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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