Variant report

Variant	rs7013867
Chromosome Location	chr8:125770177-125770178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125770013..125772423-chr8:125787066..125788729,2	K562	blood:
2	chr8:125768761..125773057-chr8:125773104..125777533,5	K562	blood:
3	chr8:125763897..125765849-chr8:125769752..125772149,2	K562	blood:
4	chr8:125768703..125771246-chr8:125774244..125777053,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12679774	0.83[YRI][hapmap]
rs13279462	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4242366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871534	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4871539	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871540	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6986404	1.00[CEU][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes]
rs7823383	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833381	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833511	0.99[EUR][1000 genomes]
rs7841287	1.00[CEU][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125761600-125772200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:125764800-125773600	Weak transcription	NHDF-Ad	bronchial
3	chr8:125765000-125773600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:125767600-125772400	Weak transcription	Osteobl	bone
5	chr8:125767600-125772600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:125767800-125770400	Weak transcription	Psoas Muscle	Psoas
7	chr8:125767800-125770800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:125767800-125772000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:125767800-125772400	Weak transcription	Fetal Heart	heart
10	chr8:125767800-125772600	Weak transcription	Pancreas	Pancrea
11	chr8:125769200-125770400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:125769200-125770400	Enhancers	Fetal Thymus	thymus
13	chr8:125769200-125770600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:125769200-125770800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr8:125769200-125770800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:125769200-125771000	Enhancers	Primary B cells from cord blood	blood
17	chr8:125769400-125770200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr8:125769400-125770400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr8:125769400-125770400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:125769400-125770400	Flanking Active TSS	GM12878-XiMat	blood
21	chr8:125769400-125770600	Enhancers	Primary B cells from peripheral blood	blood
22	chr8:125769400-125770600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr8:125769400-125770600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:125769400-125770600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:125769400-125770800	Enhancers	Primary T cells from cord blood	blood
26	chr8:125769400-125770800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr8:125769600-125770200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:125769600-125770200	Bivalent Enhancer	Dnd41	blood
29	chr8:125769600-125770400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr8:125769600-125770400	Enhancers	Thymus	Thymus
31	chr8:125769800-125770400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr8:125769800-125770400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr8:125769800-125770400	Enhancers	Duodenum Mucosa	Duodenum
34	chr8:125769800-125770400	Enhancers	HSMM	muscle
35	chr8:125769800-125770600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:125770000-125770400	Enhancers	Primary hematopoietic stem cells	blood
37	chr8:125770000-125770600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr8:125770000-125770600	Enhancers	HSMMtube	muscle
39	chr8:125770000-125771000	Enhancers	Skeletal Muscle Female	skeletal muscle

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