Variant report

Variant	rs4873083
Chromosome Location	chr8:49590085-49590086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10097910	0.91[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10111821	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs2046236	0.83[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4873083	EFCAB1	cis	parietal	SCAN
rs4873083	EFCAB1	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49585200-49592000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:49585400-49592000	Weak transcription	Left Ventricle	heart
3	chr8:49586200-49591800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:49586600-49590800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:49586600-49591800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:49586600-49592000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr8:49586800-49592400	Weak transcription	Spleen	Spleen
8	chr8:49587000-49591800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:49587000-49591800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:49587000-49592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:49587200-49591600	Weak transcription	HMEC	breast
12	chr8:49587200-49595400	Weak transcription	Right Atrium	heart
13	chr8:49587800-49590600	Weak transcription	Fetal Intestine Small	intestine
14	chr8:49587800-49591000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:49587800-49595200	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:49588000-49595200	Weak transcription	Fetal Stomach	stomach
17	chr8:49588400-49590200	Weak transcription	Fetal Lung	lung
18	chr8:49588400-49590400	Weak transcription	Ovary	ovary
19	chr8:49588400-49592000	Weak transcription	Small Intestine	intestine
20	chr8:49590000-49591000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:49590000-49591800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links